Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y5M entry

There is 1 chain in PDB entry 7Y5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8VAL 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7Y5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
15 17Right-handed 310
Helix 3
AA3
A
31 35Right-handed alpha
Helix 4
AA4
A
47 56Right-handed alpha
Helix 5
AA5
A
60 76Right-handed alpha
Helix 6
AA6
A
77 79Right-handed 310
Helix 7
AA7
A
80 86Right-handed alpha
Helix 8
AA8
A
88 97Right-handed alpha
Helix 9
AA9
A
104 116Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7Y5M.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
24 26anti-parallel
Strand 3
A
132 136anti-parallel
Strand 4
A
119 124anti-parallel
Strand 5
A
146 151parallel
Strand 6
A
154 160anti-parallel
Strand 7
A
36 39anti-parallel
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