Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y5S entry

There are 3 chains in PDB entry 7Y5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 38ASN 542
B
 PHE 38ASN 542
C
 PHE 38ASN 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 7Y5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 68Right-handed alpha
Helix 2
AA2
A
270 276Right-handed alpha
Helix 3
AA3
B
54 68Right-handed alpha
Helix 4
AA4
B
270 276Right-handed alpha
Helix 5
AA5
C
54 68Right-handed alpha
Helix 6
AA6
C
270 276Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 7Y5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
113 115parallel
Strand 3
A
149 157parallel
Strand 4
A
123 126parallel
Strand 5
A
82 84parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
113 115parallel
Strand 3
A
149 157parallel
Strand 4
A
182 188parallel
Strand 5
A
220 229parallel
Strand 6
A
248 256parallel
Strand 7
A
292 298parallel
Strand 8
A
322 325parallel
Strand 9
A
344 347parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 139first strand
Strand 2
A
170 175parallel
Strand 3
A
192 198parallel
Strand 4
A
231 237parallel
Strand 5
A
262 268parallel
Strand 6
A
306 311parallel
Strand 7
A
328 333parallel
Strand 8
A
350 354parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
243 245parallel
Strand 3
A
286 289parallel
Strand 4
A
313 318parallel
Strand 5
A
338 340parallel
Strand 6
A
367 368parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
B
406 411anti-parallel
Strand 3
B
416 422anti-parallel
Strand 4
A
428 434parallel
Strand 5
A
444 448anti-parallel
Strand 6
A
455 458anti-parallel
Strand 7
C
465 467parallel
Strand 8
C
473 477anti-parallel
Strand 9
C
481 484anti-parallel
Strand 10
B
491 492parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 492first strand
Strand 2
B
481 484parallel
Strand 3
B
473 477anti-parallel
Strand 4
B
465 467anti-parallel
Strand 5
C
455 458parallel
Strand 6
C
444 448anti-parallel
Strand 7
C
428 434anti-parallel
Strand 8
A
416 422parallel
Strand 9
A
406 411anti-parallel
Strand 10
C
391 394anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
C
406 411anti-parallel
Strand 3
C
416 422anti-parallel
Strand 4
B
428 434parallel
Strand 5
B
444 448anti-parallel
Strand 6
B
455 458anti-parallel
Strand 7
A
465 467parallel
Strand 8
A
473 477anti-parallel
Strand 9
A
481 484anti-parallel
Strand 10
C
491 492parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
507 510anti-parallel
Strand 3
A
513 516anti-parallel
Strand 4
C
523 524parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
B
513 516parallel
Strand 3
B
507 510anti-parallel
Strand 4
B
502 503anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
113 115parallel
Strand 3
B
149 157parallel
Strand 4
B
123 126parallel
Strand 5
B
82 84parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
113 115parallel
Strand 3
B
149 157parallel
Strand 4
B
182 188parallel
Strand 5
B
220 229parallel
Strand 6
B
248 256parallel
Strand 7
B
292 298parallel
Strand 8
B
322 325parallel
Strand 9
B
344 347parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 139first strand
Strand 2
B
170 175parallel
Strand 3
B
192 198parallel
Strand 4
B
231 237parallel
Strand 5
B
262 268parallel
Strand 6
B
306 311parallel
Strand 7
B
328 333parallel
Strand 8
B
350 354parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
243 245parallel
Strand 3
B
286 289parallel
Strand 4
B
313 318parallel
Strand 5
B
338 340parallel
Strand 6
B
367 368parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 524first strand
Strand 2
C
513 516parallel
Strand 3
C
507 510anti-parallel
Strand 4
C
502 503anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
113 115parallel
Strand 3
C
149 157parallel
Strand 4
C
123 126parallel
Strand 5
C
82 84parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
113 115parallel
Strand 3
C
149 157parallel
Strand 4
C
182 188parallel
Strand 5
C
220 229parallel
Strand 6
C
248 256parallel
Strand 7
C
292 298parallel
Strand 8
C
322 325parallel
Strand 9
C
344 347parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 139first strand
Strand 2
C
170 175parallel
Strand 3
C
192 198parallel
Strand 4
C
231 237parallel
Strand 5
C
262 268parallel
Strand 6
C
306 311parallel
Strand 7
C
328 333parallel
Strand 8
C
350 354parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
243 245parallel
Strand 3
C
286 289parallel
Strand 4
C
313 318parallel
Strand 5
C
338 340parallel
Strand 6
C
367 368parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il