Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y5T entry

There are 4 chains in PDB entry 7Y5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34ALA 700
B
 LEU 75ILE 467
C
 GLY 2LEU 244
D
 VAL 6PRO 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 7Y5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
80 87Right-handed alpha
Helix 3
AA3
A
101 103Right-handed 310
Helix 4
AA4
A
104 114Right-handed alpha
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
185 200Right-handed alpha
Helix 7
AA7
A
226 241Right-handed alpha
Helix 8
AA8
A
298 314Right-handed alpha
Helix 9
AA9
A
337 348Right-handed alpha
Helix 10
AB1
A
383 386Right-handed 310
Helix 11
AB2
A
387 407Right-handed alpha
Helix 12
AB3
A
426 431Right-handed alpha
Helix 13
AB4
A
472 478Right-handed alpha
Helix 14
AB5
A
481 503Right-handed alpha
Helix 15
AB6
A
514 527Right-handed alpha
Helix 16
AB7
A
539 546Right-handed 310
Helix 17
AB8
A
561 576Right-handed alpha
Helix 18
AB9
A
582 588Right-handed alpha
Helix 19
AC1
A
589 592Right-handed 310
Helix 20
AC2
A
632 637Right-handed alpha
Helix 21
AC3
A
665 693Right-handed alpha
Helix 22
AC4
A
693 698Right-handed alpha
Helix 23
AC5
B
82 103Right-handed alpha
Helix 24
AC6
B
124 156Right-handed alpha
Helix 25
AC7
B
158 175Right-handed alpha
Helix 26
AC8
B
175 189Right-handed alpha
Helix 27
AC9
B
195 215Right-handed alpha
Helix 28
AD1
B
218 240Right-handed alpha
Helix 29
AD2
B
242 263Right-handed alpha
Helix 30
AD3
B
268 278Right-handed alpha
Helix 31
AD4
B
383 399Right-handed alpha
Helix 32
AD5
B
404 429Right-handed alpha
Helix 33
AD6
B
434 450Right-handed alpha
Helix 34
AD7
B
452 463Right-handed alpha
Helix 35
AD8
C
3 14Right-handed alpha
Helix 36
AD9
C
14 24Right-handed alpha
Helix 37
AE1
C
28 60Right-handed alpha
Helix 38
AE2
C
65 102Right-handed alpha
Helix 39
AE3
C
113 139Right-handed alpha
Helix 40
AE4
C
155 184Right-handed alpha
Helix 41
AE5
C
186 203Right-handed alpha
Helix 42
AE6
C
204 206Right-handed 310
Helix 43
AE7
C
210 233Right-handed alpha
Helix 44
AE8
C
235 241Right-handed alpha
Helix 45
AE9
D
7 21Right-handed alpha
Helix 46
AF1
D
22 24Right-handed 310
Helix 47
AF2
D
26 36Right-handed alpha
Helix 48
AF3
D
38 43Right-handed alpha
Helix 49
AF4
D
49 81Right-handed alpha
Helix 50
AF5
D
87 92Right-handed alpha
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There are 6 sheets in PDB entry 7Y5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
657 663anti-parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
69 75anti-parallel
Strand 5
A
94 99parallel
Strand 6
A
118 124parallel
Strand 7
A
181 183parallel
Strand 8
A
47 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
53 54anti-parallel
Strand 3
A
649 651anti-parallel
Strand 4
A
248 250anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
375 379parallel
Strand 3
A
437 442anti-parallel
Strand 4
A
359 365parallel
Strand 5
A
275 281parallel
Strand 6
A
324 330parallel
Strand 7
A
253 259anti-parallel
Strand 8
A
626 630anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 605first strand
Strand 2
A
619 623anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
D
93 95anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
381 382anti-parallel
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