Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y5Y entry

There are 2 chains in PDB entry 7Y5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3ILE 154
B
 HIS 3ILE 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7Y5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 7Right-handed 310
Helix 2
AA2
A
54 61Right-handed alpha
Helix 3
AA3
A
91 114Right-handed alpha
Helix 4
AA4
A
114 121Right-handed alpha
Helix 5
AA5
A
122 126Right-handed 310
Helix 6
AA6
A
150 153Right-handed 310
Helix 7
AA7
B
5 7Right-handed 310
Helix 8
AA8
B
54 61Right-handed alpha
Helix 9
AA9
B
91 114Right-handed alpha
Helix 10
AB1
B
114 121Right-handed alpha
Helix 11
AB2
B
122 126Right-handed 310
Helix 12
AB3
B
150 153Right-handed 310
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There are 2 sheets in PDB entry 7Y5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
39 44parallel
Strand 3
A
27 32anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
74 82anti-parallel
Strand 6
A
128 134parallel
Strand 7
A
142 148anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
39 44parallel
Strand 3
B
27 32anti-parallel
Strand 4
B
64 70anti-parallel
Strand 5
B
75 82anti-parallel
Strand 6
B
128 134parallel
Strand 7
B
142 148anti-parallel
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