Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y68 entry

There are 2 chains in PDB entry 7Y68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	PHE 832
B	GLY 24	PHE 832

There are 34 helices in PDB entry 7Y68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	236	238	Right-handed 310
Helix 2	AA2	A	253	257	Right-handed 310
Helix 3	AA3	A	290	319	Right-handed alpha
Helix 4	AA4	A	451	479	Right-handed alpha
Helix 5	AA5	A	500	505	Right-handed alpha
Helix 6	AA6	A	506	531	Right-handed alpha
Helix 7	AA7	A	547	568	Right-handed alpha
Helix 8	AA8	A	576	581	Right-handed alpha
Helix 9	AA9	A	582	599	Right-handed alpha
Helix 10	AB1	A	602	626	Right-handed alpha
Helix 11	AB2	A	630	652	Right-handed alpha
Helix 12	AB3	A	686	710	Right-handed alpha
Helix 13	AB4	A	714	739	Right-handed alpha
Helix 14	AB5	A	749	769	Right-handed alpha
Helix 15	AB6	A	776	782	Right-handed alpha
Helix 16	AB7	A	794	817	Right-handed alpha
Helix 17	AB8	A	818	820	Right-handed 310
Helix 18	AB9	B	236	238	Right-handed 310
Helix 19	AC1	B	253	257	Right-handed 310
Helix 20	AC2	B	290	319	Right-handed alpha
Helix 21	AC3	B	451	479	Right-handed alpha
Helix 22	AC4	B	500	505	Right-handed alpha
Helix 23	AC5	B	506	531	Right-handed alpha
Helix 24	AC6	B	547	568	Right-handed alpha
Helix 25	AC7	B	576	581	Right-handed alpha
Helix 26	AC8	B	582	599	Right-handed alpha
Helix 27	AC9	B	602	626	Right-handed alpha
Helix 28	AD1	B	630	652	Right-handed alpha
Helix 29	AD2	B	686	710	Right-handed alpha
Helix 30	AD3	B	714	739	Right-handed alpha
Helix 31	AD4	B	749	769	Right-handed alpha
Helix 32	AD5	B	776	782	Right-handed alpha
Helix 33	AD6	B	794	817	Right-handed alpha
Helix 34	AD7	B	818	820	Right-handed 310

There are 10 sheets in PDB entry 7Y68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	47	58	parallel
Strand 3	A	125	136	anti-parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	90	95	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	64	71	anti-parallel
Strand 4	A	111	115	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	271	272	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	278	286	anti-parallel
Strand 3	A	184	190	anti-parallel
Strand 4	A	228	234	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	242	249	anti-parallel
Strand 3	A	198	203	anti-parallel
Strand 4	A	221	225	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	32	first strand
Strand 2	B	47	58	parallel
Strand 3	B	125	136	anti-parallel
Strand 4	B	80	85	anti-parallel
Strand 5	B	90	95	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	142	151	anti-parallel
Strand 3	B	64	71	anti-parallel
Strand 4	B	111	115	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	106	109	anti-parallel
Strand 3	B	271	272	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	278	286	anti-parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	228	234	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	242	249	anti-parallel
Strand 3	B	198	203	anti-parallel
Strand 4	B	221	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y68

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y68