Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y69 entry

There are 2 chains in PDB entry 7Y69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	ARG 826
B	GLY 24	ARG 826

There are 32 helices in PDB entry 7Y69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	236	238	Right-handed 310
Helix 2	AA2	A	253	257	Right-handed 310
Helix 3	AA3	A	290	320	Right-handed alpha
Helix 4	AA4	A	451	479	Right-handed alpha
Helix 5	AA5	A	500	505	Right-handed alpha
Helix 6	AA6	A	506	533	Right-handed alpha
Helix 7	AA7	A	546	564	Right-handed alpha
Helix 8	AA8	A	566	570	Right-handed 310
Helix 9	AA9	A	577	597	Right-handed alpha
Helix 10	AB1	A	602	626	Right-handed alpha
Helix 11	AB2	A	630	652	Right-handed alpha
Helix 12	AB3	A	689	710	Right-handed alpha
Helix 13	AB4	A	714	739	Right-handed alpha
Helix 14	AB5	A	745	769	Right-handed alpha
Helix 15	AB6	A	778	782	Right-handed 310
Helix 16	AB7	A	794	817	Right-handed alpha
Helix 17	AB8	B	236	238	Right-handed 310
Helix 18	AB9	B	253	257	Right-handed 310
Helix 19	AC1	B	290	320	Right-handed alpha
Helix 20	AC2	B	451	479	Right-handed alpha
Helix 21	AC3	B	500	505	Right-handed alpha
Helix 22	AC4	B	506	533	Right-handed alpha
Helix 23	AC5	B	546	564	Right-handed alpha
Helix 24	AC6	B	566	570	Right-handed 310
Helix 25	AC7	B	577	597	Right-handed alpha
Helix 26	AC8	B	602	626	Right-handed alpha
Helix 27	AC9	B	630	652	Right-handed alpha
Helix 28	AD1	B	689	710	Right-handed alpha
Helix 29	AD2	B	714	739	Right-handed alpha
Helix 30	AD3	B	745	769	Right-handed alpha
Helix 31	AD4	B	778	782	Right-handed 310
Helix 32	AD5	B	794	817	Right-handed alpha

There are 10 sheets in PDB entry 7Y69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	47	58	parallel
Strand 3	A	125	136	anti-parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	90	95	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	115	first strand
Strand 2	A	66	70	anti-parallel
Strand 3	A	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	271	272	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	279	286	anti-parallel
Strand 3	A	184	190	anti-parallel
Strand 4	A	228	234	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	176	first strand
Strand 2	A	243	248	anti-parallel
Strand 3	A	199	203	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	32	first strand
Strand 2	B	47	58	parallel
Strand 3	B	125	136	anti-parallel
Strand 4	B	80	85	anti-parallel
Strand 5	B	90	95	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	115	first strand
Strand 2	B	66	70	anti-parallel
Strand 3	B	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	106	109	anti-parallel
Strand 3	B	271	272	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	279	286	anti-parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	228	234	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	176	first strand
Strand 2	B	243	248	anti-parallel
Strand 3	B	199	203	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y69

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y69