Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y6E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y6E entry

There are 7 chains in PDB entry 7Y6E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 389	ASP 589
B	GLY 388	ASP 589
C	GLY 388	ASP 589
D	GLY 388	ASP 589
E	ALA 389	ASP 589
F	ALA 389	ASP 589
G	GLY 388	ASP 589

There are 7 helices in PDB entry 7Y6E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	417	421	Right-handed 310
Helix 2	AA2	B	417	421	Right-handed 310
Helix 3	AA3	C	417	421	Right-handed 310
Helix 4	AA4	D	417	421	Right-handed 310
Helix 5	AA5	E	417	421	Right-handed 310
Helix 6	AA6	F	417	421	Right-handed 310
Helix 7	AA7	G	417	421	Right-handed 310

There are 36 sheets in PDB entry 7Y6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	403	first strand
Strand 2	A	409	414	anti-parallel
Strand 3	A	455	459	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	447	first strand
Strand 2	A	427	434	anti-parallel
Strand 3	A	467	475	anti-parallel
Strand 4	A	487	490	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	507	first strand
Strand 2	A	512	517	anti-parallel
Strand 3	A	552	555	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	546	first strand
Strand 2	A	528	535	anti-parallel
Strand 3	A	563	571	anti-parallel
Strand 4	A	576	579	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	546	first strand
Strand 2	A	528	535	anti-parallel
Strand 3	A	563	571	anti-parallel
Strand 4	A	583	586	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	403	first strand
Strand 2	B	409	414	anti-parallel
Strand 3	B	455	459	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	447	first strand
Strand 2	B	425	434	anti-parallel
Strand 3	B	467	476	anti-parallel
Strand 4	B	487	490	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	512	516	anti-parallel
Strand 3	B	552	555	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	545	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	563	570	anti-parallel
Strand 4	B	583	586	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	403	first strand
Strand 2	C	409	414	anti-parallel
Strand 3	C	454	459	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	425	434	anti-parallel
Strand 3	C	467	476	anti-parallel
Strand 4	C	480	483	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	425	434	anti-parallel
Strand 3	C	467	476	anti-parallel
Strand 4	C	487	490	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	507	first strand
Strand 2	C	512	517	anti-parallel
Strand 3	C	552	555	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	546	first strand
Strand 2	C	528	535	anti-parallel
Strand 3	C	563	572	anti-parallel
Strand 4	C	575	576	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	546	first strand
Strand 2	C	528	535	anti-parallel
Strand 3	C	563	572	anti-parallel
Strand 4	C	583	586	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	403	first strand
Strand 2	D	409	414	anti-parallel
Strand 3	D	454	459	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	447	first strand
Strand 2	D	425	434	anti-parallel
Strand 3	D	467	476	anti-parallel
Strand 4	D	480	483	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	447	first strand
Strand 2	D	425	434	anti-parallel
Strand 3	D	467	476	anti-parallel
Strand 4	D	487	490	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	507	first strand
Strand 2	D	512	515	anti-parallel
Strand 3	D	552	555	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	546	first strand
Strand 2	D	528	535	anti-parallel
Strand 3	D	563	572	anti-parallel
Strand 4	D	575	576	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	546	first strand
Strand 2	D	528	535	anti-parallel
Strand 3	D	563	572	anti-parallel
Strand 4	D	583	586	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	403	first strand
Strand 2	E	409	414	anti-parallel
Strand 3	E	455	459	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	442	447	first strand
Strand 2	E	425	434	anti-parallel
Strand 3	E	467	476	anti-parallel
Strand 4	E	480	483	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	442	447	first strand
Strand 2	E	425	434	anti-parallel
Strand 3	E	467	476	anti-parallel
Strand 4	E	487	490	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	507	first strand
Strand 2	E	512	517	anti-parallel
Strand 3	E	552	555	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	546	first strand
Strand 2	E	528	535	anti-parallel
Strand 3	E	563	572	anti-parallel
Strand 4	E	575	579	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	546	first strand
Strand 2	E	528	535	anti-parallel
Strand 3	E	563	572	anti-parallel
Strand 4	E	583	586	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	400	403	first strand
Strand 2	F	409	413	anti-parallel
Strand 3	F	455	459	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	442	447	first strand
Strand 2	F	425	434	anti-parallel
Strand 3	F	467	476	anti-parallel
Strand 4	F	487	490	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	502	507	first strand
Strand 2	F	512	516	anti-parallel
Strand 3	F	552	555	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	547	first strand
Strand 2	F	528	535	anti-parallel
Strand 3	F	563	572	anti-parallel
Strand 4	F	575	576	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	547	first strand
Strand 2	F	528	535	anti-parallel
Strand 3	F	563	572	anti-parallel
Strand 4	F	583	586	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	397	403	first strand
Strand 2	G	409	414	anti-parallel
Strand 3	G	454	459	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	442	447	first strand
Strand 2	G	425	434	anti-parallel
Strand 3	G	467	476	anti-parallel
Strand 4	G	487	490	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	501	507	first strand
Strand 2	G	512	517	anti-parallel
Strand 3	G	552	555	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	541	545	first strand
Strand 2	G	528	535	anti-parallel
Strand 3	G	563	571	anti-parallel
Strand 4	G	583	586	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y6E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y6E