Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y6M entry

There are 4 chains in PDB entry 7Y6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 36GLU 325
D
 LYS 36GLU 325
A
 LYS 18ILE 24
B
 LYS 18ILE 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7Y6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
39 45Right-handed alpha
Helix 2
AA2
C
47 52Right-handed alpha
Helix 3
AA3
C
88 93Right-handed alpha
Helix 4
AA4
C
102 113Right-handed alpha
Helix 5
AA5
C
144 157Right-handed alpha
Helix 6
AA6
C
172 185Right-handed alpha
Helix 7
AA7
C
260 284Right-handed alpha
Helix 8
AA8
C
288 299Right-handed alpha
Helix 9
AA9
C
306 311Right-handed alpha
Helix 10
AB1
C
318 325Right-handed alpha
Helix 11
AB2
D
39 45Right-handed alpha
Helix 12
AB3
D
47 52Right-handed alpha
Helix 13
AB4
D
88 92Right-handed 310
Helix 14
AB5
D
102 113Right-handed alpha
Helix 15
AB6
D
143 157Right-handed alpha
Helix 16
AB7
D
172 186Right-handed alpha
Helix 17
AB8
D
260 284Right-handed alpha
Helix 18
AB9
D
288 299Right-handed alpha
Helix 19
AC1
D
306 311Right-handed alpha
Helix 20
AC2
D
318 325Right-handed alpha
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There are 8 sheets in PDB entry 7Y6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
128 133parallel
Strand 3
C
61 66parallel
Strand 4
C
161 164parallel
Strand 5
C
188 192parallel
Strand 6
C
216 221parallel
Strand 7
C
239 242parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 143first strand
Strand 2
A
20 23anti-parallel
Strand 3
C
166 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 250first strand
Strand 2
C
254 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 301first strand
Strand 2
C
314 315anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 85first strand
Strand 2
D
128 133parallel
Strand 3
D
61 66parallel
Strand 4
D
161 164parallel
Strand 5
D
188 192parallel
Strand 6
D
216 221parallel
Strand 7
D
239 242parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 142first strand
Strand 2
B
21 23anti-parallel
Strand 3
D
166 167anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
246 250first strand
Strand 2
D
254 258anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 301first strand
Strand 2
D
314 315anti-parallel
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