Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y6U entry

There is 1 chain in PDB entry 7Y6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 31GLU 1254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7Y6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 38Right-handed alpha
Helix 2
AA2
A
233 238Right-handed alpha
Helix 3
AA3
A
325 329Right-handed 310
Helix 4
AA4
A
466 475Right-handed alpha
Helix 5
AA5
A
807 814Right-handed alpha
Helix 6
AA6
A
816 824Right-handed alpha
Helix 7
AA7
A
825 827Right-handed 310
Helix 8
AA8
A
828 852Right-handed alpha
Helix 9
AA9
A
855 861Right-handed alpha
Helix 10
AB1
A
895 904Right-handed alpha
Helix 11
AB2
A
910 914Right-handed 310
Helix 12
AB3
A
928 935Right-handed alpha
Helix 13
AB4
A
946 961Right-handed alpha
Helix 14
AB5
A
967 971Right-handed 310
Helix 15
AB6
A
973 986Right-handed alpha
Helix 16
AB7
A
992 1016Right-handed alpha
Helix 17
AB8
A
1030 1055Right-handed alpha
Helix 18
AB9
A
1056 1058Right-handed 310
Helix 19
AC1
A
1066 1074Right-handed alpha
Helix 20
AC2
A
1075 1123Right-handed alpha
Helix 21
AC3
A
1193 1197Right-handed 310
Helix 22
AC4
A
1216 1218Right-handed 310
Helix 23
AC5
A
1237 1242Right-handed alpha
Helix 24
AC6
A
1247 1253Right-handed alpha
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There are 19 sheets in PDB entry 7Y6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
211 216anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
191 195anti-parallel
Strand 3
A
91 96anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
121 127anti-parallel
Strand 6
A
147 150anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
191 195anti-parallel
Strand 3
A
91 96anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
121 127anti-parallel
Strand 6
A
153 154anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
172 175anti-parallel
Strand 3
A
164 169anti-parallel
Strand 4
A
79 82anti-parallel
Strand 5
A
204 207anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 288first strand
Strand 2
A
438 454anti-parallel
Strand 3
A
318 322anti-parallel
Strand 4
A
397 401anti-parallel
Strand 5
A
405 408anti-parallel
Strand 6
A
411 415anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 288first strand
Strand 2
A
438 454anti-parallel
Strand 3
A
457 463anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 298first strand
Strand 2
A
419 425anti-parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
344 350anti-parallel
Strand 5
A
371 378anti-parallel
Strand 6
A
385 391anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 488first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
712 718anti-parallel
Strand 4
A
735 738anti-parallel
Strand 5
A
727 730anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
649 654parallel
Strand 3
A
657 665anti-parallel
Strand 4
A
694 698anti-parallel
Strand 5
A
683 687anti-parallel
Strand 6
A
675 677anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 513first strand
Strand 2
A
548 551parallel
Strand 3
A
618 630parallel
Strand 4
A
584 591anti-parallel
Strand 5
A
541 543anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 513first strand
Strand 2
A
548 551parallel
Strand 3
A
618 630parallel
Strand 4
A
599 601anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 535first strand
Strand 2
A
516 522anti-parallel
Strand 3
A
554 559parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 568first strand
Strand 2
A
603 606anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 751first strand
Strand 2
A
754 756anti-parallel
Strand 3
A
762 764anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 786first strand
Strand 2
A
1162 1168anti-parallel
Strand 3
A
1187 1191anti-parallel
Strand 4
A
1202 1206anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
789 798first strand
Strand 2
A
1150 1159anti-parallel
Strand 3
A
1138 1147anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
804 806first strand
Strand 2
A
938 940anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
881 882first strand
Strand 2
A
891 892anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1220 1223first strand
Strand 2
A
1178 1182anti-parallel
Strand 3
A
1172 1174anti-parallel
Strand 4
A
1231 1233parallel
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