Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y72 entry

There are 4 chains in PDB entry 7Y72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 335PHE 515
C
 LEU 335PHE 515
P
 ASP 1CYS 219
O
 GLN 1LYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7Y72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 343Right-handed alpha
Helix 2
AA2
A
366 371Right-handed alpha
Helix 3
AA3
A
383 390Right-handed 310
Helix 4
AA4
A
406 410Right-handed 310
Helix 5
AA5
C
338 343Right-handed alpha
Helix 6
AA6
C
349 353Right-handed 310
Helix 7
AA7
C
365 371Right-handed alpha
Helix 8
AA8
C
383 390Right-handed 310
Helix 9
AA9
C
406 411Right-handed 310
Helix 10
AB1
P
126 133Right-handed alpha
Helix 11
AB2
O
61 64Right-handed 310
Helix 12
AB3
O
86 90Right-handed 310
Helix 13
AB4
O
163 165Right-handed 310
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There are 13 sheets in PDB entry 7Y72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
395 402anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
432 437anti-parallel
Strand 5
A
376 379anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 358first strand
Strand 2
C
395 401anti-parallel
Strand 3
C
508 514anti-parallel
Strand 4
C
431 437anti-parallel
Strand 5
C
376 380anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
5 7first strand
Strand 2
P
19 29anti-parallel
Strand 3
P
73 80anti-parallel
Strand 4
P
67 70anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 13first strand
Strand 2
P
107 111parallel
Strand 3
P
90 94anti-parallel
Strand 4
P
39 43anti-parallel
Strand 5
P
50 54anti-parallel
Strand 6
P
58 59anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
119 123first strand
Strand 2
P
134 144anti-parallel
Strand 3
P
178 187anti-parallel
Strand 4
P
164 168anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
158 160first strand
Strand 2
P
150 155anti-parallel
Strand 3
P
196 202anti-parallel
Strand 4
P
210 215anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
5 7first strand
Strand 2
O
18 23anti-parallel
Strand 3
O
77 82anti-parallel
Strand 4
O
67 69anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
11 12first strand
Strand 2
O
114 118parallel
Strand 3
O
91 95anti-parallel
Strand 4
O
34 39anti-parallel
Strand 5
O
46 51anti-parallel
Strand 6
O
57 59anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
127 131first strand
Strand 2
O
143 152anti-parallel
Strand 3
O
183 191anti-parallel
Strand 4
O
170 172anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
127 131first strand
Strand 2
O
143 152anti-parallel
Strand 3
O
183 191anti-parallel
Strand 4
O
176 177anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
158 161first strand
Strand 2
O
201 206anti-parallel
Strand 3
O
214 218anti-parallel
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