Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y77 entry

There are 3 chains in PDB entry 7Y77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 60	PHE 465
B	HIS 60	PHE 459
C	HIS 60	PHE 459

There are 36 helices in PDB entry 7Y77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	76	Right-handed alpha
Helix 2	AA2	A	93	104	Right-handed alpha
Helix 3	AA3	A	104	110	Right-handed alpha
Helix 4	AA4	A	141	145	Right-handed 310
Helix 5	AA5	A	186	193	Right-handed alpha
Helix 6	AA6	A	232	237	Right-handed alpha
Helix 7	AA7	A	272	276	Right-handed alpha
Helix 8	AA8	A	302	306	Right-handed 310
Helix 9	AA9	A	327	331	Right-handed 310
Helix 10	AB1	A	375	377	Right-handed 310
Helix 11	AB2	A	432	440	Right-handed alpha
Helix 12	AB3	A	446	465	Right-handed alpha
Helix 13	AB4	B	61	76	Right-handed alpha
Helix 14	AB5	B	93	104	Right-handed alpha
Helix 15	AB6	B	104	110	Right-handed alpha
Helix 16	AB7	B	141	145	Right-handed 310
Helix 17	AB8	B	186	193	Right-handed alpha
Helix 18	AB9	B	232	237	Right-handed alpha
Helix 19	AC1	B	272	276	Right-handed alpha
Helix 20	AC2	B	302	306	Right-handed 310
Helix 21	AC3	B	327	331	Right-handed 310
Helix 22	AC4	B	375	377	Right-handed 310
Helix 23	AC5	B	432	440	Right-handed alpha
Helix 24	AC6	B	446	459	Right-handed alpha
Helix 25	AC7	C	61	76	Right-handed alpha
Helix 26	AC8	C	93	104	Right-handed alpha
Helix 27	AC9	C	104	110	Right-handed alpha
Helix 28	AD1	C	141	145	Right-handed 310
Helix 29	AD2	C	186	193	Right-handed alpha
Helix 30	AD3	C	232	237	Right-handed alpha
Helix 31	AD4	C	272	276	Right-handed alpha
Helix 32	AD5	C	302	306	Right-handed 310
Helix 33	AD6	C	327	331	Right-handed 310
Helix 34	AD7	C	375	377	Right-handed 310
Helix 35	AD8	C	432	440	Right-handed alpha
Helix 36	AD9	C	446	459	Right-handed alpha

There are 9 sheets in PDB entry 7Y77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	122	first strand
Strand 2	A	125	136	anti-parallel
Strand 3	A	154	156	first strand
Strand 4	A	162	171	anti-parallel
Strand 5	A	216	220	first strand
Strand 6	A	227	231	anti-parallel
Strand 7	A	265	271	first strand
Strand 8	A	286	296	anti-parallel
Strand 9	A	335	340	first strand
Strand 10	A	344	358	anti-parallel
Strand 11	A	364	373	anti-parallel
Strand 12	A	388	391	anti-parallel
Strand 13	A	401	405	anti-parallel
Strand 14	A	414	416	anti-parallel
Strand 15	A	424	431	anti-parallel
Strand 16	A	441	443	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	211	213	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	249	first strand
Strand 2	A	257	262	anti-parallel

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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	122	first strand
Strand 2	B	125	136	anti-parallel
Strand 3	B	154	156	first strand
Strand 4	B	162	171	anti-parallel
Strand 5	B	216	220	first strand
Strand 6	B	227	231	anti-parallel
Strand 7	B	265	271	first strand
Strand 8	B	286	296	anti-parallel
Strand 9	B	335	340	first strand
Strand 10	B	344	358	anti-parallel
Strand 11	B	364	373	anti-parallel
Strand 12	B	388	391	anti-parallel
Strand 13	B	401	405	anti-parallel
Strand 14	B	414	416	anti-parallel
Strand 15	B	424	431	anti-parallel
Strand 16	B	441	443	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	211	213	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	257	262	anti-parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	122	first strand
Strand 2	C	125	136	anti-parallel
Strand 3	C	154	156	first strand
Strand 4	C	162	171	anti-parallel
Strand 5	C	216	220	first strand
Strand 6	C	227	231	anti-parallel
Strand 7	C	265	271	first strand
Strand 8	C	286	296	anti-parallel
Strand 9	C	335	340	first strand
Strand 10	C	344	358	anti-parallel
Strand 11	C	364	373	anti-parallel
Strand 12	C	388	391	anti-parallel
Strand 13	C	401	405	anti-parallel
Strand 14	C	413	416	anti-parallel
Strand 15	C	424	431	anti-parallel
Strand 16	C	441	443	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	211	213	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	249	first strand
Strand 2	C	257	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y77

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y77