Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y78 entry

There are 4 chains in PDB entry 7Y78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 17	PHE 356
B	ASN 17	PRO 357
C	ASP 16	ILE 355
D	ASN 17	GLU 244

There are 32 helices in PDB entry 7Y78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	61	Right-handed 310
Helix 2	AA2	A	105	108	Right-handed 310
Helix 3	AA3	A	129	133	Right-handed 310
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	202	204	Right-handed 310
Helix 6	AA6	A	210	218	Right-handed alpha
Helix 7	AA7	A	252	264	Right-handed alpha
Helix 8	AA8	A	277	281	Right-handed 310
Helix 9	AA9	A	282	291	Right-handed alpha
Helix 10	AB1	B	59	61	Right-handed 310
Helix 11	AB2	B	129	133	Right-handed 310
Helix 12	AB3	B	148	152	Right-handed 310
Helix 13	AB4	B	210	218	Right-handed alpha
Helix 14	AB5	B	252	264	Right-handed alpha
Helix 15	AB6	B	277	281	Right-handed 310
Helix 16	AB7	B	282	291	Right-handed alpha
Helix 17	AB8	C	59	62	Right-handed 310
Helix 18	AB9	C	105	108	Right-handed 310
Helix 19	AC1	C	129	133	Right-handed 310
Helix 20	AC2	C	148	152	Right-handed 310
Helix 21	AC3	C	210	218	Right-handed alpha
Helix 22	AC4	C	252	264	Right-handed alpha
Helix 23	AC5	C	277	281	Right-handed 310
Helix 24	AC6	C	282	291	Right-handed alpha
Helix 25	AC7	D	59	61	Right-handed 310
Helix 26	AC8	D	105	108	Right-handed 310
Helix 27	AC9	D	129	133	Right-handed 310
Helix 28	AD1	D	148	152	Right-handed 310
Helix 29	AD2	D	210	218	Right-handed alpha
Helix 30	AD3	D	252	264	Right-handed alpha
Helix 31	AD4	D	277	281	Right-handed 310
Helix 32	AD5	D	282	291	Right-handed alpha

There are 28 sheets in PDB entry 7Y78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	78	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	26	31	anti-parallel
Strand 4	A	154	160	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	52	54	anti-parallel
Strand 3	A	138	139	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	97	100	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	118	120	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	200	first strand
Strand 2	A	220	237	anti-parallel
Strand 3	A	318	332	anti-parallel
Strand 4	A	343	354	anti-parallel
Strand 5	A	242	251	anti-parallel
Strand 6	A	304	311	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	273	275	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	78	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	26	31	anti-parallel
Strand 4	B	154	160	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	52	54	anti-parallel
Strand 3	B	138	139	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	97	100	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	118	120	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	128	first strand
Strand 2	B	141	143	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	200	first strand
Strand 2	B	220	237	anti-parallel
Strand 3	B	318	332	anti-parallel
Strand 4	B	343	355	anti-parallel
Strand 5	B	242	251	anti-parallel
Strand 6	B	304	311	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	273	275	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	31	first strand
Strand 2	C	154	160	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	52	54	anti-parallel
Strand 3	C	138	139	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	74	78	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	97	100	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	118	120	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	141	143	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	200	first strand
Strand 2	C	220	237	anti-parallel
Strand 3	C	318	332	anti-parallel
Strand 4	C	343	354	anti-parallel
Strand 5	C	242	251	anti-parallel
Strand 6	C	304	311	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	273	275	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	78	first strand
Strand 2	D	63	68	anti-parallel
Strand 3	D	26	31	anti-parallel
Strand 4	D	154	160	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	52	54	anti-parallel
Strand 3	D	138	139	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	97	100	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	112	first strand
Strand 2	D	118	120	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	128	first strand
Strand 2	D	141	143	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	200	first strand
Strand 2	D	220	237	anti-parallel
Strand 3	D	318	332	anti-parallel
Strand 4	D	343	354	anti-parallel
Strand 5	D	242	251	anti-parallel
Strand 6	D	304	311	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	273	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y78

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y78