Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y7P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y7P entry

There are 2 chains in PDB entry 7Y7P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 390	GLU 1371
B	VAL 394	VAL 801

There are 89 helices in PDB entry 7Y7P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	391	399	Right-handed alpha
Helix 2	AA2	A	407	412	Right-handed 310
Helix 3	AA3	A	413	427	Right-handed alpha
Helix 4	AA4	A	441	446	Right-handed alpha
Helix 5	AA5	A	449	458	Right-handed alpha
Helix 6	AA6	A	460	465	Right-handed alpha
Helix 7	AA7	A	473	483	Right-handed alpha
Helix 8	AA8	A	524	531	Right-handed alpha
Helix 9	AA9	A	551	557	Right-handed alpha
Helix 10	AB1	A	559	571	Right-handed alpha
Helix 11	AB2	A	638	642	Right-handed 310
Helix 12	AB3	A	646	656	Right-handed alpha
Helix 13	AB4	A	657	661	Right-handed 310
Helix 14	AB5	A	664	671	Right-handed alpha
Helix 15	AB6	A	672	677	Right-handed alpha
Helix 16	AB7	A	686	688	Right-handed 310
Helix 17	AB8	A	715	727	Right-handed alpha
Helix 18	AB9	A	774	777	Right-handed 310
Helix 19	AC1	A	797	805	Right-handed alpha
Helix 20	AC2	A	808	837	Right-handed alpha
Helix 21	AC3	A	837	849	Right-handed alpha
Helix 22	AC4	A	852	859	Right-handed alpha
Helix 23	AC5	A	870	881	Right-handed alpha
Helix 24	AC6	A	888	909	Right-handed alpha
Helix 25	AC7	A	967	971	Right-handed 310
Helix 26	AC8	A	979	983	Right-handed 310
Helix 27	AC9	A	998	1003	Right-handed alpha
Helix 28	AD1	A	1018	1023	Right-handed alpha
Helix 29	AD2	A	1046	1055	Right-handed alpha
Helix 30	AD3	A	1057	1078	Right-handed alpha
Helix 31	AD4	A	1081	1097	Right-handed alpha
Helix 32	AD5	A	1101	1116	Right-handed alpha
Helix 33	AD6	A	1116	1121	Right-handed alpha
Helix 34	AD7	A	1125	1136	Right-handed alpha
Helix 35	AD8	A	1146	1150	Right-handed 310
Helix 36	AD9	A	1161	1170	Right-handed alpha
Helix 37	AE1	A	1171	1186	Right-handed alpha
Helix 38	AE2	A	1204	1217	Right-handed alpha
Helix 39	AE3	A	1217	1241	Right-handed alpha
Helix 40	AE4	A	1253	1268	Right-handed alpha
Helix 41	AE5	A	1283	1290	Right-handed alpha
Helix 42	AE6	A	1295	1298	Right-handed 310
Helix 43	AE7	A	1299	1314	Right-handed alpha
Helix 44	AE8	A	1317	1338	Right-handed alpha
Helix 45	AE9	A	1349	1355	Right-handed alpha
Helix 46	AF1	A	1359	1371	Right-handed alpha
Helix 47	AF2	B	395	399	Right-handed alpha
Helix 48	AF3	B	406	411	Right-handed alpha
Helix 49	AF4	B	413	428	Right-handed alpha
Helix 50	AF5	B	441	447	Right-handed 310
Helix 51	AF6	B	449	457	Right-handed alpha
Helix 52	AF7	B	473	483	Right-handed alpha
Helix 53	AF8	B	524	531	Right-handed alpha
Helix 54	AF9	B	551	556	Right-handed alpha
Helix 55	AG1	B	561	571	Right-handed alpha
Helix 56	AG2	B	646	656	Right-handed alpha
Helix 57	AG3	B	657	660	Right-handed 310
Helix 58	AG4	B	664	671	Right-handed alpha
Helix 59	AG5	B	671	677	Right-handed alpha
Helix 60	AG6	B	686	688	Right-handed 310
Helix 61	AG7	B	715	727	Right-handed alpha
Helix 62	AG8	B	797	805	Right-handed alpha
Helix 63	AG9	B	808	837	Right-handed alpha
Helix 64	AH1	B	837	849	Right-handed alpha
Helix 65	AH2	B	851	859	Right-handed alpha
Helix 66	AH3	B	870	881	Right-handed alpha
Helix 67	AH4	B	888	909	Right-handed alpha
Helix 68	AH5	B	979	983	Right-handed 310
Helix 69	AH6	B	998	1003	Right-handed alpha
Helix 70	AH7	B	1018	1024	Right-handed alpha
Helix 71	AH8	B	1046	1055	Right-handed alpha
Helix 72	AH9	B	1057	1078	Right-handed alpha
Helix 73	AI1	B	1081	1097	Right-handed alpha
Helix 74	AI2	B	1101	1116	Right-handed alpha
Helix 75	AI3	B	1116	1121	Right-handed alpha
Helix 76	AI4	B	1125	1135	Right-handed alpha
Helix 77	AI5	B	1146	1150	Right-handed 310
Helix 78	AI6	B	1161	1169	Right-handed alpha
Helix 79	AI7	B	1170	1185	Right-handed alpha
Helix 80	AI8	B	1200	1203	Right-handed 310
Helix 81	AI9	B	1204	1216	Right-handed alpha
Helix 82	AJ1	B	1217	1239	Right-handed alpha
Helix 83	AJ2	B	1256	1268	Right-handed alpha
Helix 84	AJ3	B	1283	1289	Right-handed alpha
Helix 85	AJ4	B	1295	1298	Right-handed 310
Helix 86	AJ5	B	1299	1314	Right-handed alpha
Helix 87	AJ6	B	1317	1338	Right-handed alpha
Helix 88	AJ7	B	1349	1355	Right-handed alpha
Helix 89	AJ8	B	1359	1369	Right-handed alpha

There are 17 sheets in PDB entry 7Y7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	490	500	anti-parallel
Strand 3	A	519	522	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	490	500	anti-parallel
Strand 3	A	535	541	parallel
Strand 4	A	607	619	anti-parallel
Strand 5	A	578	591	anti-parallel
Strand 6	A	573	575	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	684	first strand
Strand 2	A	779	785	anti-parallel
Strand 3	A	734	739	anti-parallel
Strand 4	A	742	748	anti-parallel
Strand 5	A	711	714	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	692	first strand
Strand 2	A	759	761	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	793	first strand
Strand 2	A	913	924	anti-parallel
Strand 3	A	988	991	parallel
Strand 4	A	934	944	anti-parallel
Strand 5	A	949	953	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	793	first strand
Strand 2	A	913	924	anti-parallel
Strand 3	A	1012	1016	anti-parallel
Strand 4	A	956	961	anti-parallel
Strand 5	A	972	976	anti-parallel
Strand 6	A	934	944	parallel
Strand 7	A	949	953	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	864	first strand
Strand 2	A	867	868	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1041	1042	first strand
Strand 2	A	1122	1123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1346	1348	first strand
Strand 2	B	1346	1348	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1356	1358	first strand
Strand 2	B	1356	1358	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	490	500	anti-parallel
Strand 3	B	519	522	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	490	500	anti-parallel
Strand 3	B	535	541	parallel
Strand 4	B	607	619	anti-parallel
Strand 5	B	578	591	anti-parallel
Strand 6	B	573	574	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	684	first strand
Strand 2	B	779	785	anti-parallel
Strand 3	B	734	739	anti-parallel
Strand 4	B	742	748	anti-parallel
Strand 5	B	711	714	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	692	first strand
Strand 2	B	759	761	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	864	first strand
Strand 2	B	867	868	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	949	953	first strand
Strand 2	B	934	944	anti-parallel
Strand 3	B	988	991	anti-parallel
Strand 4	B	917	924	parallel
Strand 5	B	1012	1016	anti-parallel
Strand 6	B	956	961	anti-parallel
Strand 7	B	971	976	anti-parallel
Strand 8	B	934	944	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1041	1042	first strand
Strand 2	B	1122	1123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y7P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y7P