Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y7Q entry

There are 2 chains in PDB entry 7Y7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 391	TYR 1402
B	LEU 398	ILE 748

There are 90 helices in PDB entry 7Y7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	391	397	Right-handed alpha
Helix 2	AA2	A	406	410	Right-handed 310
Helix 3	AA3	A	413	427	Right-handed alpha
Helix 4	AA4	A	441	447	Right-handed 310
Helix 5	AA5	A	449	458	Right-handed alpha
Helix 6	AA6	A	473	483	Right-handed alpha
Helix 7	AA7	A	524	531	Right-handed alpha
Helix 8	AA8	A	551	557	Right-handed alpha
Helix 9	AA9	A	560	570	Right-handed alpha
Helix 10	AB1	A	594	598	Right-handed 310
Helix 11	AB2	A	646	656	Right-handed alpha
Helix 12	AB3	A	657	660	Right-handed 310
Helix 13	AB4	A	664	671	Right-handed alpha
Helix 14	AB5	A	671	677	Right-handed alpha
Helix 15	AB6	A	686	688	Right-handed 310
Helix 16	AB7	A	715	727	Right-handed alpha
Helix 17	AB8	A	774	777	Right-handed 310
Helix 18	AB9	A	797	805	Right-handed alpha
Helix 19	AC1	A	808	835	Right-handed alpha
Helix 20	AC2	A	837	849	Right-handed alpha
Helix 21	AC3	A	851	859	Right-handed alpha
Helix 22	AC4	A	870	881	Right-handed alpha
Helix 23	AC5	A	888	910	Right-handed alpha
Helix 24	AC6	A	967	969	Right-handed 310
Helix 25	AC7	A	979	983	Right-handed 310
Helix 26	AC8	A	998	1003	Right-handed alpha
Helix 27	AC9	A	1018	1023	Right-handed alpha
Helix 28	AD1	A	1046	1052	Right-handed alpha
Helix 29	AD2	A	1057	1077	Right-handed alpha
Helix 30	AD3	A	1081	1097	Right-handed alpha
Helix 31	AD4	A	1101	1116	Right-handed alpha
Helix 32	AD5	A	1116	1121	Right-handed alpha
Helix 33	AD6	A	1125	1137	Right-handed alpha
Helix 34	AD7	A	1146	1150	Right-handed 310
Helix 35	AD8	A	1161	1169	Right-handed alpha
Helix 36	AD9	A	1170	1185	Right-handed alpha
Helix 37	AE1	A	1200	1203	Right-handed 310
Helix 38	AE2	A	1204	1216	Right-handed alpha
Helix 39	AE3	A	1217	1242	Right-handed alpha
Helix 40	AE4	A	1253	1267	Right-handed alpha
Helix 41	AE5	A	1283	1290	Right-handed alpha
Helix 42	AE6	A	1295	1298	Right-handed 310
Helix 43	AE7	A	1299	1314	Right-handed alpha
Helix 44	AE8	A	1317	1338	Right-handed alpha
Helix 45	AE9	A	1349	1355	Right-handed alpha
Helix 46	AF1	A	1359	1371	Right-handed alpha
Helix 47	AF2	B	406	410	Right-handed 310
Helix 48	AF3	B	413	427	Right-handed alpha
Helix 49	AF4	B	441	447	Right-handed 310
Helix 50	AF5	B	449	456	Right-handed alpha
Helix 51	AF6	B	473	483	Right-handed alpha
Helix 52	AF7	B	524	531	Right-handed alpha
Helix 53	AF8	B	561	570	Right-handed alpha
Helix 54	AF9	B	646	656	Right-handed alpha
Helix 55	AG1	B	657	660	Right-handed 310
Helix 56	AG2	B	664	671	Right-handed alpha
Helix 57	AG3	B	671	677	Right-handed alpha
Helix 58	AG4	B	686	688	Right-handed 310
Helix 59	AG5	B	715	727	Right-handed alpha
Helix 60	AG6	B	774	777	Right-handed 310
Helix 61	AG7	B	795	797	Right-handed 310
Helix 62	AG8	B	798	806	Right-handed alpha
Helix 63	AG9	B	808	835	Right-handed alpha
Helix 64	AH1	B	837	849	Right-handed alpha
Helix 65	AH2	B	851	859	Right-handed alpha
Helix 66	AH3	B	870	881	Right-handed alpha
Helix 67	AH4	B	888	909	Right-handed alpha
Helix 68	AH5	B	967	969	Right-handed 310
Helix 69	AH6	B	979	983	Right-handed 310
Helix 70	AH7	B	998	1003	Right-handed alpha
Helix 71	AH8	B	1018	1024	Right-handed alpha
Helix 72	AH9	B	1046	1053	Right-handed alpha
Helix 73	AI1	B	1056	1077	Right-handed alpha
Helix 74	AI2	B	1080	1096	Right-handed alpha
Helix 75	AI3	B	1101	1114	Right-handed alpha
Helix 76	AI4	B	1116	1121	Right-handed alpha
Helix 77	AI5	B	1125	1137	Right-handed alpha
Helix 78	AI6	B	1146	1150	Right-handed 310
Helix 79	AI7	B	1161	1169	Right-handed alpha
Helix 80	AI8	B	1170	1189	Right-handed alpha
Helix 81	AI9	B	1200	1203	Right-handed 310
Helix 82	AJ1	B	1204	1217	Right-handed alpha
Helix 83	AJ2	B	1217	1242	Right-handed alpha
Helix 84	AJ3	B	1253	1267	Right-handed alpha
Helix 85	AJ4	B	1283	1290	Right-handed alpha
Helix 86	AJ5	B	1295	1298	Right-handed 310
Helix 87	AJ6	B	1299	1314	Right-handed alpha
Helix 88	AJ7	B	1317	1338	Right-handed alpha
Helix 89	AJ8	B	1349	1355	Right-handed alpha
Helix 90	AJ9	B	1359	1370	Right-handed alpha

There are 17 sheets in PDB entry 7Y7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	490	500	anti-parallel
Strand 3	A	519	522	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	490	500	anti-parallel
Strand 3	A	535	541	parallel
Strand 4	A	607	619	anti-parallel
Strand 5	A	578	591	anti-parallel
Strand 6	A	573	575	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	684	first strand
Strand 2	A	779	785	anti-parallel
Strand 3	A	734	739	anti-parallel
Strand 4	A	742	748	anti-parallel
Strand 5	A	711	714	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	692	first strand
Strand 2	A	759	761	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	793	first strand
Strand 2	A	913	914	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	864	first strand
Strand 2	A	867	868	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	952	first strand
Strand 2	A	934	945	anti-parallel
Strand 3	A	988	991	anti-parallel
Strand 4	A	917	924	parallel
Strand 5	A	1012	1016	anti-parallel
Strand 6	A	956	961	anti-parallel
Strand 7	A	971	976	anti-parallel
Strand 8	A	934	945	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1041	1042	first strand
Strand 2	A	1122	1123	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1346	1348	first strand
Strand 2	B	1346	1348	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1356	1358	first strand
Strand 2	B	1356	1358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	490	500	anti-parallel
Strand 3	B	519	522	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	490	500	anti-parallel
Strand 3	B	535	541	parallel
Strand 4	B	609	619	anti-parallel
Strand 5	B	578	587	anti-parallel
Strand 6	B	573	575	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	684	first strand
Strand 2	B	779	785	anti-parallel
Strand 3	B	734	739	anti-parallel
Strand 4	B	742	748	anti-parallel
Strand 5	B	711	714	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	692	first strand
Strand 2	B	759	761	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	864	first strand
Strand 2	B	867	868	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	948	953	first strand
Strand 2	B	934	945	anti-parallel
Strand 3	B	988	991	anti-parallel
Strand 4	B	917	924	parallel
Strand 5	B	1012	1016	anti-parallel
Strand 6	B	956	961	anti-parallel
Strand 7	B	971	976	anti-parallel
Strand 8	B	934	945	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1041	1042	first strand
Strand 2	B	1122	1123	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y7Q