Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y7U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y7U entry

There are 2 chains in PDB entry 7Y7U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 49VAL 336
B
 GLY 49VAL 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7Y7U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 73Right-handed 310
Helix 2
AA2
A
79 90Right-handed alpha
Helix 3
AA3
A
129 137Right-handed alpha
Helix 4
AA4
A
140 144Right-handed 310
Helix 5
AA5
A
153 158Right-handed alpha
Helix 6
AA6
A
159 161Right-handed 310
Helix 7
AA7
A
178 185Right-handed alpha
Helix 8
AA8
A
186 192Right-handed alpha
Helix 9
AA9
A
197 210Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
278 296Right-handed alpha
Helix 12
AB3
B
71 73Right-handed 310
Helix 13
AB4
B
79 90Right-handed alpha
Helix 14
AB5
B
129 137Right-handed alpha
Helix 15
AB6
B
140 144Right-handed 310
Helix 16
AB7
B
153 158Right-handed alpha
Helix 17
AB8
B
159 161Right-handed 310
Helix 18
AB9
B
178 186Right-handed alpha
Helix 19
AC1
B
186 192Right-handed alpha
Helix 20
AC2
B
194 196Right-handed 310
Helix 21
AC3
B
197 210Right-handed alpha
Helix 22
AC4
B
261 266Right-handed alpha
Helix 23
AC5
B
278 297Right-handed alpha
Helix 24
AC6
B
328 334Right-handed alpha
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There are 6 sheets in PDB entry 7Y7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
58 70anti-parallel
Strand 3
A
97 107anti-parallel
Strand 4
A
112 115anti-parallel
Strand 5
A
146 148parallel
Strand 6
A
173 177parallel
Strand 7
A
215 218parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
272 273anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
241 246anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
300 301parallel
Strand 6
A
310 316anti-parallel
Strand 7
A
319 324anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
58 70anti-parallel
Strand 3
B
97 107anti-parallel
Strand 4
B
112 115anti-parallel
Strand 5
B
146 148parallel
Strand 6
B
173 177parallel
Strand 7
B
215 218parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
272 273anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
228 232anti-parallel
Strand 3
B
241 247anti-parallel
Strand 4
B
250 254anti-parallel
Strand 5
B
300 301parallel
Strand 6
B
310 316anti-parallel
Strand 7
B
319 324anti-parallel
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