Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y82 entry

There are 3 chains in PDB entry 7Y82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	GLN 1692
B	G 19	A 59
C	U -5	U 19

There are 48 helices in PDB entry 7Y82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	32	38	Right-handed alpha
Helix 3	AA3	A	39	41	Right-handed 310
Helix 4	AA4	A	59	78	Right-handed alpha
Helix 5	AA5	A	127	134	Right-handed alpha
Helix 6	AA6	A	145	149	Right-handed 310
Helix 7	AA7	A	168	172	Right-handed alpha
Helix 8	AA8	A	198	203	Right-handed alpha
Helix 9	AA9	A	213	215	Right-handed 310
Helix 10	AB1	A	216	227	Right-handed alpha
Helix 11	AB2	A	269	287	Right-handed alpha
Helix 12	AB3	A	290	304	Right-handed alpha
Helix 13	AB4	A	308	313	Right-handed alpha
Helix 14	AB5	A	339	350	Right-handed alpha
Helix 15	AB6	A	354	374	Right-handed alpha
Helix 16	AB7	A	471	488	Right-handed alpha
Helix 17	AB8	A	503	511	Right-handed alpha
Helix 18	AB9	A	569	580	Right-handed alpha
Helix 19	AC1	A	594	598	Right-handed 310
Helix 20	AC2	A	617	625	Right-handed alpha
Helix 21	AC3	A	626	628	Right-handed 310
Helix 22	AC4	A	630	637	Right-handed alpha
Helix 23	AC5	A	654	657	Right-handed 310
Helix 24	AC6	A	658	665	Right-handed alpha
Helix 25	AC7	A	686	692	Right-handed alpha
Helix 26	AC8	A	723	740	Right-handed alpha
Helix 27	AC9	A	741	744	Right-handed 310
Helix 28	AD1	A	752	759	Right-handed alpha
Helix 29	AD2	A	831	847	Right-handed alpha
Helix 30	AD3	A	908	914	Right-handed alpha
Helix 31	AD4	A	999	1015	Right-handed alpha
Helix 32	AD5	A	1177	1201	Right-handed alpha
Helix 33	AD6	A	1201	1211	Right-handed alpha
Helix 34	AD7	A	1327	1340	Right-handed alpha
Helix 35	AD8	A	1346	1354	Right-handed alpha
Helix 36	AD9	A	1394	1399	Right-handed alpha
Helix 37	AE1	A	1400	1404	Right-handed 310
Helix 38	AE2	A	1414	1421	Right-handed alpha
Helix 39	AE3	A	1463	1468	Right-handed alpha
Helix 40	AE4	A	1486	1493	Right-handed alpha
Helix 41	AE5	A	1493	1501	Right-handed alpha
Helix 42	AE6	A	1528	1540	Right-handed alpha
Helix 43	AE7	A	1552	1556	Right-handed 310
Helix 44	AE8	A	1583	1603	Right-handed alpha
Helix 45	AE9	A	1615	1618	Right-handed 310
Helix 46	AF1	A	1619	1629	Right-handed alpha
Helix 47	AF2	A	1662	1668	Right-handed alpha
Helix 48	AF3	A	1673	1683	Right-handed alpha

There are 21 sheets in PDB entry 7Y82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	53	58	anti-parallel
Strand 5	A	42	47	anti-parallel
Strand 6	A	19	22	parallel
Strand 7	A	188	197	anti-parallel
Strand 8	A	173	181	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	7	14	anti-parallel
Strand 4	A	233	239	anti-parallel
Strand 5	A	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	404	405	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	337	338	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	612	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	612	anti-parallel
Strand 5	A	646	648	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	534	first strand
Strand 2	A	539	550	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	767	769	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	669	678	anti-parallel
Strand 6	A	863	868	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	799	808	parallel
Strand 3	A	787	792	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	713	714	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	1642	1643	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1478	1481	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	995	998	anti-parallel
Strand 3	A	1434	1438	anti-parallel
Strand 4	A	1517	1527	anti-parallel
Strand 5	A	950	960	anti-parallel
Strand 6	A	1559	1569	anti-parallel
Strand 7	A	1547	1548	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1517	1527	anti-parallel
Strand 3	A	950	960	anti-parallel
Strand 4	A	1559	1569	anti-parallel
Strand 5	A	1580	1581	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	968	first strand
Strand 2	A	985	989	anti-parallel
Strand 3	A	1507	1510	parallel
Strand 4	A	1453	1455	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1029	1031	first strand
Strand 2	A	1388	1390	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1369	1371	first strand
Strand 2	A	1380	1382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y82

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y82