Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y83 entry

There are 4 chains in PDB entry 7Y83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	ASN 1689
B	G 19	A 54
C	U 0	G 22
D	THR 15	PRO 715

There are 77 helices in PDB entry 7Y83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	32	38	Right-handed alpha
Helix 3	AA3	A	59	78	Right-handed alpha
Helix 4	AA4	A	127	134	Right-handed alpha
Helix 5	AA5	A	145	149	Right-handed 310
Helix 6	AA6	A	168	172	Right-handed alpha
Helix 7	AA7	A	213	215	Right-handed 310
Helix 8	AA8	A	216	227	Right-handed alpha
Helix 9	AA9	A	269	287	Right-handed alpha
Helix 10	AB1	A	291	303	Right-handed alpha
Helix 11	AB2	A	304	307	Right-handed 310
Helix 12	AB3	A	308	313	Right-handed alpha
Helix 13	AB4	A	339	350	Right-handed alpha
Helix 14	AB5	A	354	374	Right-handed alpha
Helix 15	AB6	A	471	488	Right-handed alpha
Helix 16	AB7	A	503	511	Right-handed alpha
Helix 17	AB8	A	569	580	Right-handed alpha
Helix 18	AB9	A	594	598	Right-handed 310
Helix 19	AC1	A	617	625	Right-handed alpha
Helix 20	AC2	A	626	628	Right-handed 310
Helix 21	AC3	A	630	637	Right-handed alpha
Helix 22	AC4	A	654	657	Right-handed 310
Helix 23	AC5	A	658	664	Right-handed alpha
Helix 24	AC6	A	686	693	Right-handed alpha
Helix 25	AC7	A	723	739	Right-handed alpha
Helix 26	AC8	A	752	759	Right-handed alpha
Helix 27	AC9	A	776	780	Right-handed 310
Helix 28	AD1	A	831	847	Right-handed alpha
Helix 29	AD2	A	855	859	Right-handed 310
Helix 30	AD3	A	908	914	Right-handed alpha
Helix 31	AD4	A	999	1015	Right-handed alpha
Helix 32	AD5	A	1394	1399	Right-handed alpha
Helix 33	AD6	A	1414	1421	Right-handed alpha
Helix 34	AD7	A	1463	1468	Right-handed alpha
Helix 35	AD8	A	1485	1493	Right-handed alpha
Helix 36	AD9	A	1493	1501	Right-handed alpha
Helix 37	AE1	A	1528	1540	Right-handed alpha
Helix 38	AE2	A	1552	1556	Right-handed 310
Helix 39	AE3	A	1583	1603	Right-handed alpha
Helix 40	AE4	A	1615	1618	Right-handed 310
Helix 41	AE5	A	1619	1629	Right-handed alpha
Helix 42	AE6	A	1662	1668	Right-handed alpha
Helix 43	AE7	A	1673	1682	Right-handed alpha
Helix 44	AE8	D	16	33	Right-handed alpha
Helix 45	AE9	D	37	60	Right-handed alpha
Helix 46	AF1	D	64	81	Right-handed alpha
Helix 47	AF2	D	90	110	Right-handed alpha
Helix 48	AF3	D	117	136	Right-handed alpha
Helix 49	AF4	D	141	155	Right-handed alpha
Helix 50	AF5	D	163	177	Right-handed alpha
Helix 51	AF6	D	180	182	Right-handed 310
Helix 52	AF7	D	183	190	Right-handed alpha
Helix 53	AF8	D	194	205	Right-handed alpha
Helix 54	AF9	D	208	224	Right-handed alpha
Helix 55	AG1	D	230	246	Right-handed alpha
Helix 56	AG2	D	250	267	Right-handed alpha
Helix 57	AG3	D	270	277	Right-handed alpha
Helix 58	AG4	D	278	280	Right-handed 310
Helix 59	AG5	D	281	296	Right-handed alpha
Helix 60	AG6	D	304	320	Right-handed alpha
Helix 61	AG7	D	322	329	Right-handed alpha
Helix 62	AG8	D	342	357	Right-handed alpha
Helix 63	AG9	D	433	450	Right-handed alpha
Helix 64	AH1	D	451	453	Right-handed 310
Helix 65	AH2	D	454	469	Right-handed alpha
Helix 66	AH3	D	470	474	Right-handed 310
Helix 67	AH4	D	489	495	Right-handed 310
Helix 68	AH5	D	496	500	Right-handed 310
Helix 69	AH6	D	509	514	Right-handed alpha
Helix 70	AH7	D	521	525	Right-handed 310
Helix 71	AH8	D	566	572	Right-handed alpha
Helix 72	AH9	D	592	595	Right-handed 310
Helix 73	AI1	D	607	611	Right-handed alpha
Helix 74	AI2	D	644	652	Right-handed alpha
Helix 75	AI3	D	665	675	Right-handed alpha
Helix 76	AI4	D	683	691	Right-handed alpha
Helix 77	AI5	D	699	708	Right-handed alpha

There are 25 sheets in PDB entry 7Y83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	54	58	anti-parallel
Strand 5	A	42	46	anti-parallel
Strand 6	A	19	22	parallel
Strand 7	A	193	197	anti-parallel
Strand 8	A	173	177	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	7	14	anti-parallel
Strand 4	A	233	239	anti-parallel
Strand 5	A	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	403	405	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	188	190	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	337	338	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	451	452	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	608	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	533	first strand
Strand 2	A	540	550	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	612	first strand
Strand 2	A	646	648	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	767	769	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	669	678	anti-parallel
Strand 6	A	863	867	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	713	714	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	790	first strand
Strand 2	A	804	807	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	1642	1643	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1478	1481	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	995	998	anti-parallel
Strand 3	A	1434	1438	anti-parallel
Strand 4	A	1516	1527	anti-parallel
Strand 5	A	950	960	anti-parallel
Strand 6	A	1559	1570	anti-parallel
Strand 7	A	1547	1548	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1516	1527	anti-parallel
Strand 3	A	950	960	anti-parallel
Strand 4	A	1559	1570	anti-parallel
Strand 5	A	1580	1581	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	987	first strand
Strand 2	A	1507	1510	parallel
Strand 3	A	1453	1455	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	427	first strand
Strand 2	D	418	420	anti-parallel
Strand 3	D	400	404	anti-parallel
Strand 4	D	483	487	parallel
Strand 5	D	516	518	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	407	first strand
Strand 2	D	413	415	anti-parallel
Strand 3	D	430	432	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	580	582	first strand
Strand 2	D	621	624	parallel
Strand 3	D	656	657	parallel
Strand 4	D	712	713	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	587	first strand
Strand 2	D	597	599	anti-parallel
Strand 3	D	605	606	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y83

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y83