Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y84 entry

There are 3 chains in PDB entry 7Y84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	GLN 1692
B	G 19	G 53
C	THR 15	PRO 715

There are 81 helices in PDB entry 7Y84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	32	38	Right-handed alpha
Helix 3	AA3	A	59	78	Right-handed alpha
Helix 4	AA4	A	127	134	Right-handed alpha
Helix 5	AA5	A	145	149	Right-handed 310
Helix 6	AA6	A	169	172	Right-handed alpha
Helix 7	AA7	A	198	203	Right-handed alpha
Helix 8	AA8	A	213	215	Right-handed 310
Helix 9	AA9	A	216	227	Right-handed alpha
Helix 10	AB1	A	269	287	Right-handed alpha
Helix 11	AB2	A	291	303	Right-handed alpha
Helix 12	AB3	A	304	307	Right-handed 310
Helix 13	AB4	A	308	313	Right-handed alpha
Helix 14	AB5	A	339	350	Right-handed alpha
Helix 15	AB6	A	354	375	Right-handed alpha
Helix 16	AB7	A	471	488	Right-handed alpha
Helix 17	AB8	A	503	511	Right-handed alpha
Helix 18	AB9	A	569	580	Right-handed alpha
Helix 19	AC1	A	617	625	Right-handed alpha
Helix 20	AC2	A	626	628	Right-handed 310
Helix 21	AC3	A	630	637	Right-handed alpha
Helix 22	AC4	A	638	642	Right-handed 310
Helix 23	AC5	A	654	657	Right-handed 310
Helix 24	AC6	A	658	664	Right-handed alpha
Helix 25	AC7	A	665	667	Right-handed 310
Helix 26	AC8	A	686	693	Right-handed alpha
Helix 27	AC9	A	723	740	Right-handed alpha
Helix 28	AD1	A	741	744	Right-handed 310
Helix 29	AD2	A	752	759	Right-handed alpha
Helix 30	AD3	A	776	780	Right-handed 310
Helix 31	AD4	A	831	847	Right-handed alpha
Helix 32	AD5	A	855	859	Right-handed 310
Helix 33	AD6	A	873	879	Right-handed alpha
Helix 34	AD7	A	908	914	Right-handed alpha
Helix 35	AD8	A	999	1015	Right-handed alpha
Helix 36	AD9	A	1394	1399	Right-handed alpha
Helix 37	AE1	A	1400	1404	Right-handed 310
Helix 38	AE2	A	1414	1420	Right-handed alpha
Helix 39	AE3	A	1463	1468	Right-handed alpha
Helix 40	AE4	A	1486	1493	Right-handed alpha
Helix 41	AE5	A	1493	1501	Right-handed alpha
Helix 42	AE6	A	1528	1540	Right-handed alpha
Helix 43	AE7	A	1552	1556	Right-handed 310
Helix 44	AE8	A	1583	1603	Right-handed alpha
Helix 45	AE9	A	1615	1618	Right-handed 310
Helix 46	AF1	A	1619	1629	Right-handed alpha
Helix 47	AF2	A	1662	1668	Right-handed alpha
Helix 48	AF3	A	1673	1682	Right-handed alpha
Helix 49	AF4	C	16	32	Right-handed alpha
Helix 50	AF5	C	37	60	Right-handed alpha
Helix 51	AF6	C	61	63	Right-handed 310
Helix 52	AF7	C	64	82	Right-handed alpha
Helix 53	AF8	C	90	110	Right-handed alpha
Helix 54	AF9	C	117	136	Right-handed alpha
Helix 55	AG1	C	141	154	Right-handed alpha
Helix 56	AG2	C	163	176	Right-handed alpha
Helix 57	AG3	C	183	190	Right-handed alpha
Helix 58	AG4	C	194	205	Right-handed alpha
Helix 59	AG5	C	208	224	Right-handed alpha
Helix 60	AG6	C	230	246	Right-handed alpha
Helix 61	AG7	C	249	267	Right-handed alpha
Helix 62	AG8	C	279	295	Right-handed alpha
Helix 63	AG9	C	304	323	Right-handed alpha
Helix 64	AH1	C	327	333	Right-handed alpha
Helix 65	AH2	C	340	359	Right-handed alpha
Helix 66	AH3	C	433	451	Right-handed alpha
Helix 67	AH4	C	454	469	Right-handed alpha
Helix 68	AH5	C	470	473	Right-handed 310
Helix 69	AH6	C	489	495	Right-handed 310
Helix 70	AH7	C	496	500	Right-handed 310
Helix 71	AH8	C	509	513	Right-handed 310
Helix 72	AH9	C	521	525	Right-handed 310
Helix 73	AI1	C	547	552	Right-handed alpha
Helix 74	AI2	C	566	573	Right-handed alpha
Helix 75	AI3	C	592	595	Right-handed 310
Helix 76	AI4	C	607	614	Right-handed alpha
Helix 77	AI5	C	627	632	Right-handed alpha
Helix 78	AI6	C	644	652	Right-handed alpha
Helix 79	AI7	C	665	678	Right-handed alpha
Helix 80	AI8	C	683	691	Right-handed alpha
Helix 81	AI9	C	699	708	Right-handed alpha

There are 23 sheets in PDB entry 7Y84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	53	58	anti-parallel
Strand 5	A	42	45	anti-parallel
Strand 6	A	18	22	parallel
Strand 7	A	188	197	anti-parallel
Strand 8	A	173	181	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	204	211	anti-parallel
Strand 5	A	7	14	anti-parallel
Strand 6	A	233	239	anti-parallel
Strand 7	A	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	403	405	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	337	338	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	613	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	613	anti-parallel
Strand 5	A	646	648	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	457	460	anti-parallel
Strand 3	A	546	550	parallel
Strand 4	A	526	530	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	767	769	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	669	678	anti-parallel
Strand 6	A	865	868	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	805	808	parallel
Strand 3	A	787	789	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	713	714	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	1642	1643	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1478	1481	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	995	998	anti-parallel
Strand 3	A	1434	1438	anti-parallel
Strand 4	A	1517	1527	anti-parallel
Strand 5	A	950	960	anti-parallel
Strand 6	A	1559	1569	anti-parallel
Strand 7	A	1547	1548	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1517	1527	anti-parallel
Strand 3	A	950	960	anti-parallel
Strand 4	A	1559	1569	anti-parallel
Strand 5	A	1580	1581	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	987	first strand
Strand 2	A	1507	1510	parallel
Strand 3	A	1453	1455	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1421	1422	first strand
Strand 2	A	1425	1426	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	324	326	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	432	first strand
Strand 2	C	413	420	anti-parallel
Strand 3	C	400	407	anti-parallel
Strand 4	C	483	487	parallel
Strand 5	C	516	518	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	540	first strand
Strand 2	C	579	583	parallel
Strand 3	C	621	624	parallel
Strand 4	C	656	660	parallel
Strand 5	C	709	713	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	587	first strand
Strand 2	C	597	599	anti-parallel
Strand 3	C	605	606	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y84

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y84