Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y85 entry

There are 4 chains in PDB entry 7Y85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	GLN 1692
B	G 19	A 54
C	U 0	C 22
D	THR 15	PRO 715

There are 73 helices in PDB entry 7Y85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	32	38	Right-handed alpha
Helix 3	AA3	A	59	78	Right-handed alpha
Helix 4	AA4	A	127	134	Right-handed alpha
Helix 5	AA5	A	145	149	Right-handed 310
Helix 6	AA6	A	169	172	Right-handed alpha
Helix 7	AA7	A	198	203	Right-handed alpha
Helix 8	AA8	A	213	215	Right-handed 310
Helix 9	AA9	A	216	227	Right-handed alpha
Helix 10	AB1	A	269	287	Right-handed alpha
Helix 11	AB2	A	290	307	Right-handed alpha
Helix 12	AB3	A	308	313	Right-handed alpha
Helix 13	AB4	A	338	350	Right-handed alpha
Helix 14	AB5	A	354	375	Right-handed alpha
Helix 15	AB6	A	471	488	Right-handed alpha
Helix 16	AB7	A	503	511	Right-handed alpha
Helix 17	AB8	A	569	580	Right-handed alpha
Helix 18	AB9	A	618	624	Right-handed alpha
Helix 19	AC1	A	625	628	Right-handed 310
Helix 20	AC2	A	630	637	Right-handed alpha
Helix 21	AC3	A	638	642	Right-handed 310
Helix 22	AC4	A	658	665	Right-handed alpha
Helix 23	AC5	A	686	692	Right-handed alpha
Helix 24	AC6	A	723	740	Right-handed alpha
Helix 25	AC7	A	741	744	Right-handed 310
Helix 26	AC8	A	752	759	Right-handed alpha
Helix 27	AC9	A	831	847	Right-handed alpha
Helix 28	AD1	A	908	914	Right-handed alpha
Helix 29	AD2	A	999	1015	Right-handed alpha
Helix 30	AD3	A	1394	1399	Right-handed alpha
Helix 31	AD4	A	1414	1420	Right-handed alpha
Helix 32	AD5	A	1463	1468	Right-handed alpha
Helix 33	AD6	A	1486	1493	Right-handed alpha
Helix 34	AD7	A	1493	1501	Right-handed alpha
Helix 35	AD8	A	1528	1540	Right-handed alpha
Helix 36	AD9	A	1552	1556	Right-handed 310
Helix 37	AE1	A	1583	1603	Right-handed alpha
Helix 38	AE2	A	1615	1618	Right-handed 310
Helix 39	AE3	A	1619	1629	Right-handed alpha
Helix 40	AE4	A	1662	1668	Right-handed alpha
Helix 41	AE5	A	1673	1683	Right-handed alpha
Helix 42	AE6	D	16	33	Right-handed alpha
Helix 43	AE7	D	37	60	Right-handed alpha
Helix 44	AE8	D	61	63	Right-handed 310
Helix 45	AE9	D	64	81	Right-handed alpha
Helix 46	AF1	D	90	109	Right-handed alpha
Helix 47	AF2	D	116	136	Right-handed alpha
Helix 48	AF3	D	141	155	Right-handed alpha
Helix 49	AF4	D	163	177	Right-handed alpha
Helix 50	AF5	D	183	188	Right-handed alpha
Helix 51	AF6	D	194	202	Right-handed alpha
Helix 52	AF7	D	210	223	Right-handed alpha
Helix 53	AF8	D	230	244	Right-handed alpha
Helix 54	AF9	D	250	267	Right-handed alpha
Helix 55	AG1	D	278	296	Right-handed alpha
Helix 56	AG2	D	304	323	Right-handed alpha
Helix 57	AG3	D	327	333	Right-handed alpha
Helix 58	AG4	D	340	361	Right-handed alpha
Helix 59	AG5	D	432	451	Right-handed alpha
Helix 60	AG6	D	454	469	Right-handed alpha
Helix 61	AG7	D	470	473	Right-handed 310
Helix 62	AG8	D	489	494	Right-handed 310
Helix 63	AG9	D	509	514	Right-handed alpha
Helix 64	AH1	D	521	525	Right-handed 310
Helix 65	AH2	D	543	547	Right-handed 310
Helix 66	AH3	D	566	573	Right-handed alpha
Helix 67	AH4	D	592	595	Right-handed 310
Helix 68	AH5	D	607	614	Right-handed alpha
Helix 69	AH6	D	627	632	Right-handed alpha
Helix 70	AH7	D	644	652	Right-handed alpha
Helix 71	AH8	D	665	679	Right-handed alpha
Helix 72	AH9	D	683	691	Right-handed alpha
Helix 73	AI1	D	699	708	Right-handed alpha

There are 23 sheets in PDB entry 7Y85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	53	58	anti-parallel
Strand 5	A	42	46	anti-parallel
Strand 6	A	19	22	parallel
Strand 7	A	188	197	anti-parallel
Strand 8	A	173	181	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	204	211	anti-parallel
Strand 5	A	7	14	anti-parallel
Strand 6	A	233	239	anti-parallel
Strand 7	A	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	404	405	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	613	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	613	anti-parallel
Strand 5	A	646	648	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	533	first strand
Strand 2	A	540	550	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	767	769	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	669	678	anti-parallel
Strand 6	A	863	868	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	799	808	parallel
Strand 3	A	787	792	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	713	714	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	1642	1643	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1478	1481	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	995	998	anti-parallel
Strand 3	A	1434	1438	anti-parallel
Strand 4	A	1517	1527	anti-parallel
Strand 5	A	950	960	anti-parallel
Strand 6	A	1559	1570	anti-parallel
Strand 7	A	1547	1548	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1517	1527	anti-parallel
Strand 3	A	950	960	anti-parallel
Strand 4	A	1559	1570	anti-parallel
Strand 5	A	1580	1582	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	968	first strand
Strand 2	A	985	989	anti-parallel
Strand 3	A	1507	1510	parallel
Strand 4	A	1453	1455	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1421	1422	first strand
Strand 2	A	1425	1426	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	276	first strand
Strand 2	D	324	326	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	431	first strand
Strand 2	D	414	420	anti-parallel
Strand 3	D	400	407	anti-parallel
Strand 4	D	483	487	parallel
Strand 5	D	516	518	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	540	first strand
Strand 2	D	579	583	parallel
Strand 3	D	621	624	parallel
Strand 4	D	657	660	parallel
Strand 5	D	709	712	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	587	first strand
Strand 2	D	597	598	anti-parallel
Strand 3	D	605	606	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y85

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y85