Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y89 entry

There are 5 chains in PDB entry 7Y89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 4	PHE 354
B	GLU 10	ASN 340
G	GLN 11	GLU 63
S	ASP 1	LEU 235
A	GLU 54	LEU 340

There are 30 helices in PDB entry 7Y89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	6	31	Right-handed alpha
Helix 2	AA2	C	45	53	Right-handed alpha
Helix 3	AA3	C	207	212	Right-handed alpha
Helix 4	AA4	C	213	216	Right-handed 310
Helix 5	AA5	C	226	230	Right-handed 310
Helix 6	AA6	C	242	255	Right-handed alpha
Helix 7	AA7	C	270	281	Right-handed alpha
Helix 8	AA8	C	295	309	Right-handed alpha
Helix 9	AA9	C	330	349	Right-handed alpha
Helix 10	AB1	B	11	25	Right-handed alpha
Helix 11	AB2	B	29	35	Right-handed alpha
Helix 12	AB3	G	12	24	Right-handed alpha
Helix 13	AB4	G	29	45	Right-handed alpha
Helix 14	AB5	G	46	48	Right-handed 310
Helix 15	AB6	G	55	59	Right-handed 310
Helix 16	AB7	S	28	32	Right-handed 310
Helix 17	AB8	S	87	91	Right-handed 310
Helix 18	AB9	S	208	212	Right-handed 310
Helix 19	AC1	A	55	87	Right-handed alpha
Helix 20	AC2	A	92	121	Right-handed alpha
Helix 21	AC3	A	128	162	Right-handed alpha
Helix 22	AC4	A	165	170	Right-handed 310
Helix 23	AC5	A	172	191	Right-handed alpha
Helix 24	AC6	A	192	197	Right-handed 310
Helix 25	AC7	A	209	213	Right-handed 310
Helix 26	AC8	A	219	249	Right-handed alpha
Helix 27	AC9	A	254	275	Right-handed alpha
Helix 28	AD1	A	276	291	Right-handed alpha
Helix 29	AD2	A	296	327	Right-handed alpha
Helix 30	AD3	A	332	339	Right-handed alpha

There are 15 sheets in PDB entry 7Y89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	195	199	anti-parallel
Strand 3	C	34	37	parallel
Strand 4	C	220	221	parallel
Strand 5	C	263	264	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	C	321	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	7	first strand
Strand 2	S	19	23	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	117	119	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	59	60	first strand
Strand 2	S	49	51	anti-parallel
Strand 3	S	33	35	anti-parallel
Strand 4	S	98	99	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	45	46	first strand
Strand 2	S	38	39	anti-parallel
Strand 3	S	93	94	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	178	anti-parallel
Strand 6	S	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y89

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y89