Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y8A entry

There are 26 chains in PDB entry 7Y8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
GLY 41GLU 219
2
ASP 43GLY 210
3
GLU 42ALA 221
4
GLU 41PRO 216
5
LEU 40ILE 227
6
MET 40PHE 212
7
ASN 41GLN 217
8
THR 55PHE 227
9
LEU 40LEU 219
A
LYS 12GLY 752
B
THR 3PHE 733
C
SER 2TYR 81
D
THR 4ASN 140
E
VAL 2VAL 62
F
VAL 24ARG 183
I
MET 1GLU 33
J
MET 1MET 42
K
VAL 10SER 87
L
GLN 3LEU 149
M
MET 1GLN 30
O
PHE 56GLY 147
R
ALA 42LYS 133
X
UNK 1UNK 145
Z
ALA 65PRO 217
a
MET 42PHE 212
b
ASP 43MET 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are198 helices in PDB entry 7Y8A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
1
61 65Right-handed 310
Helix 2
AA2
1
78 82Right-handed 310
Helix 3
AA3
1
84 112Right-handed alpha
Helix 4
AA4
1
116 121Right-handed alpha
Helix 5
AA5
1
126 137Right-handed alpha
Helix 6
AA6
1
137 162Right-handed alpha
Helix 7
AA7
1
185 214Right-handed alpha
Helix 8
AA8
2
71 76Right-handed alpha
Helix 9
AA9
2
77 105Right-handed alpha
Helix 10
AB1
2
114 126Right-handed alpha
Helix 11
AB2
2
126 152Right-handed alpha
Helix 12
AB3
2
169 202Right-handed alpha
Helix 13
AB4
2
204 209Right-handed alpha
Helix 14
AB5
3
70 75Right-handed alpha
Helix 15
AB6
3
76 101Right-handed alpha
Helix 16
AB7
3
115 123Right-handed alpha
Helix 17
AB8
3
124 144Right-handed alpha
Helix 18
AB9
3
169 172Right-handed 310
Helix 19
AC1
3
173 206Right-handed alpha
Helix 20
AC2
3
208 215Right-handed alpha
Helix 21
AC3
4
69 74Right-handed alpha
Helix 22
AC4
4
75 103Right-handed alpha
Helix 23
AC5
4
105 109Right-handed 310
Helix 24
AC6
4
114 123Right-handed alpha
Helix 25
AC7
4
123 147Right-handed alpha
Helix 26
AC8
4
165 198Right-handed alpha
Helix 27
AC9
4
200 208Right-handed alpha
Helix 28
AD1
5
77 82Right-handed alpha
Helix 29
AD2
5
83 111Right-handed alpha
Helix 30
AD3
5
115 121Right-handed alpha
Helix 31
AD4
5
125 139Right-handed alpha
Helix 32
AD5
5
144 169Right-handed alpha
Helix 33
AD6
5
189 220Right-handed alpha
Helix 34
AD7
5
222 227Right-handed alpha
Helix 35
AD8
6
73 101Right-handed alpha
Helix 36
AD9
6
105 111Right-handed alpha
Helix 37
AE1
6
115 126Right-handed alpha
Helix 38
AE2
6
126 151Right-handed alpha
Helix 39
AE3
6
169 202Right-handed alpha
Helix 40
AE4
6
204 212Right-handed alpha
Helix 41
AE5
7
68 73Right-handed alpha
Helix 42
AE6
7
74 102Right-handed alpha
Helix 43
AE7
7
106 110Right-handed 310
Helix 44
AE8
7
113 121Right-handed alpha
Helix 45
AE9
7
122 142Right-handed alpha
Helix 46
AF1
7
170 202Right-handed alpha
Helix 47
AF2
7
205 212Right-handed alpha
Helix 48
AF3
8
56 65Right-handed alpha
Helix 49
AF4
8
65 72Right-handed alpha
Helix 50
AF5
8
76 104Right-handed alpha
Helix 51
AF6
8
114 119Right-handed alpha
Helix 52
AF7
8
120 123Right-handed 310
Helix 53
AF8
8
131 154Right-handed alpha
Helix 54
AF9
8
185 211Right-handed alpha
Helix 55
AG1
8
213 223Right-handed alpha
Helix 56
AG2
9
77 81Right-handed 310
Helix 57
AG3
9
83 111Right-handed alpha
Helix 58
AG4
9
116 121Right-handed alpha
Helix 59
AG5
9
126 138Right-handed alpha
Helix 60
AG6
9
138 154Right-handed alpha
Helix 61
AG7
9
154 165Right-handed alpha
Helix 62
AG8
9
184 214Right-handed alpha
Helix 63
AG9
A
25 31Right-handed 310
Helix 64
AH1
A
36 41Right-handed alpha
Helix 65
AH2
A
46 55Right-handed alpha
Helix 66
AH3
A
58 63Right-handed alpha
Helix 67
AH4
A
65 98Right-handed alpha
Helix 68
AH5
A
100 107Right-handed alpha
Helix 69
AH6
A
123 128Right-handed 310
Helix 70
AH7
A
143 152Right-handed alpha
Helix 71
AH8
A
155 183Right-handed alpha
Helix 72
AH9
A
187 192Right-handed alpha
Helix 73
AI1
A
193 203Right-handed alpha
Helix 74
AI2
A
203 220Right-handed alpha
Helix 75
AI3
A
220 231Right-handed alpha
Helix 76
AI4
A
239 246Right-handed alpha
Helix 77
AI5
A
246 254Right-handed alpha
Helix 78
AI6
A
255 259Right-handed 310
Helix 79
AI7
A
261 267Right-handed alpha
Helix 80
AI8
A
268 273Right-handed 310
Helix 81
AI9
A
290 309Right-handed alpha
Helix 82
AJ1
A
321 329Right-handed alpha
Helix 83
AJ2
A
340 348Right-handed alpha
Helix 84
AJ3
A
348 374Right-handed alpha
Helix 85
AJ4
A
383 416Right-handed alpha
Helix 86
AJ5
A
425 433Right-handed alpha
Helix 87
AJ6
A
433 466Right-handed alpha
Helix 88
AJ7
A
467 471Right-handed 310
Helix 89
AJ8
A
481 494Right-handed alpha
Helix 90
AJ9
A
529 556Right-handed alpha
Helix 91
AK1
A
587 618Right-handed alpha
Helix 92
AK2
A
634 640Right-handed alpha
Helix 93
AK3
A
642 650Right-handed alpha
Helix 94
AK4
A
650 655Right-handed alpha
Helix 95
AK5
A
655 660Right-handed alpha
Helix 96
AK6
A
666 688Right-handed alpha
Helix 97
AK7
A
690 707Right-handed alpha
Helix 98
AK8
A
720 751Right-handed alpha
Helix 99
AK9
B
9 14Right-handed alpha
Helix 100
AL1
B
18 27Right-handed alpha
Helix 101
AL2
B
30 34Right-handed 310
Helix 102
AL3
B
38 72Right-handed alpha
Helix 103
AL4
B
73 78Right-handed alpha
Helix 104
AL5
B
97 105Right-handed alpha
Helix 105
AL6
B
119 128Right-handed alpha
Helix 106
AL7
B
131 156Right-handed alpha
Helix 107
AL8
B
164 169Right-handed alpha
Helix 108
AL9
B
170 181Right-handed alpha
Helix 109
AM1
B
183 197Right-handed alpha
Helix 110
AM2
B
197 203Right-handed alpha
Helix 111
AM3
B
222 228Right-handed alpha
Helix 112
AM4
B
229 234Right-handed 310
Helix 113
AM5
B
269 288Right-handed alpha
Helix 114
AM6
B
300 308Right-handed alpha
Helix 115
AM7
B
321 329Right-handed alpha
Helix 116
AM8
B
329 355Right-handed alpha
Helix 117
AM9
B
360 363Right-handed 310
Helix 118
AN1
B
364 397Right-handed alpha
Helix 119
AN2
B
406 414Right-handed alpha
Helix 120
AN3
B
414 446Right-handed alpha
Helix 121
AN4
B
448 452Right-handed 310
Helix 122
AN5
B
457 468Right-handed alpha
Helix 123
AN6
B
483 490Right-handed alpha
Helix 124
AN7
B
493 502Right-handed alpha
Helix 125
AN8
B
513 541Right-handed alpha
Helix 126
AN9
B
549 554Right-handed alpha
Helix 127
AO1
B
571 604Right-handed alpha
Helix 128
AO2
B
605 613Right-handed alpha
Helix 129
AO3
B
615 623Right-handed alpha
Helix 130
AO4
B
623 628Right-handed alpha
Helix 131
AO5
B
628 633Right-handed alpha
Helix 132
AO6
B
643 666Right-handed alpha
Helix 133
AO7
B
667 685Right-handed alpha
Helix 134
AO8
B
701 733Right-handed alpha
Helix 135
AO9
C
15 21Right-handed alpha
Helix 136
AP1
C
44 48Right-handed 310
Helix 137
AP2
C
52 57Right-handed alpha
Helix 138
AP3
C
73 78Right-handed alpha
Helix 139
AP4
D
22 28Right-handed alpha
Helix 140
AP5
D
64 78Right-handed alpha
Helix 141
AP6
D
122 126Right-handed 310
Helix 142
AP7
E
54 56Right-handed 310
Helix 143
AP8
F
33 52Right-handed alpha
Helix 144
AP9
F
58 81Right-handed alpha
Helix 145
AQ1
F
98 100Right-handed 310
Helix 146
AQ2
F
101 132Right-handed alpha
Helix 147
AQ3
F
135 142Right-handed alpha
Helix 148
AQ4
F
144 155Right-handed alpha
Helix 149
AQ5
F
157 168Right-handed alpha
Helix 150
AQ6
F
174 178Right-handed 310
Helix 151
AQ7
I
2 4Right-handed 310
Helix 152
AQ8
I
5 31Right-handed alpha
Helix 153
AQ9
J
2 11Right-handed alpha
Helix 154
AR1
J
11 34Right-handed alpha
Helix 155
AR2
K
17 39Right-handed alpha
Helix 156
AR3
K
58 83Right-handed alpha
Helix 157
AR4
L
9 11Right-handed 310
Helix 158
AR5
L
19 24Right-handed alpha
Helix 159
AR6
L
24 34Right-handed alpha
Helix 160
AR7
L
42 66Right-handed alpha
Helix 161
AR8
L
73 101Right-handed alpha
Helix 162
AR9
L
112 141Right-handed alpha
Helix 163
AS1
L
141 147Right-handed alpha
Helix 164
AS2
M
3 30Right-handed alpha
Helix 165
AS3
O
67 83Right-handed alpha
Helix 166
AS4
O
95 110Right-handed alpha
Helix 167
AS5
O
119 146Right-handed alpha
Helix 168
AS6
R
68 72Right-handed 310
Helix 169
AS7
R
75 96Right-handed alpha
Helix 170
AS8
R
105 113Right-handed alpha
Helix 171
AS9
R
113 131Right-handed alpha
Helix 172
AT1
X
5 23Right-handed alpha
Helix 173
AT2
X
24 38Right-handed alpha
Helix 174
AT3
X
47 58Right-handed alpha
Helix 175
AT4
X
59 75Right-handed alpha
Helix 176
AT5
X
89 96Right-handed alpha
Helix 177
AT6
X
100 121Right-handed alpha
Helix 178
AT7
X
122 144Right-handed alpha
Helix 179
AT8
Z
72 77Right-handed 310
Helix 180
AT9
Z
103 108Right-handed alpha
Helix 181
AU1
Z
109 129Right-handed alpha
Helix 182
AU2
Z
144 148Right-handed 310
Helix 183
AU3
Z
161 166Right-handed alpha
Helix 184
AU4
Z
204 214Right-handed alpha
Helix 185
AU5
a
69 74Right-handed alpha
Helix 186
AU6
a
75 103Right-handed alpha
Helix 187
AU7
a
107 113Right-handed alpha
Helix 188
AU8
a
116 128Right-handed alpha
Helix 189
AU9
a
128 153Right-handed alpha
Helix 190
AV1
a
167 171Right-handed 310
Helix 191
AV2
a
172 202Right-handed alpha
Helix 192
AV3
a
204 211Right-handed alpha
Helix 193
AV4
b
70 74Right-handed 310
Helix 194
AV5
b
76 102Right-handed alpha
Helix 195
AV6
b
114 122Right-handed alpha
Helix 196
AV7
b
123 143Right-handed alpha
Helix 197
AV8
b
171 204Right-handed alpha
Helix 198
AV9
b
206 213Right-handed alpha
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There are 14 sheets in PDB entry 7Y8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
104 105first strand
Strand 2
Z
187 188anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
184 186anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 116first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
129 132anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
515 516first strand
Strand 2
A
521 523anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
620 622first strand
Strand 2
A
628 630anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
635 636first strand
Strand 2
B
639 640anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 7first strand
Strand 2
C
65 68anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
27 30first strand
Strand 2
C
38 41anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
56 62first strand
Strand 2
D
30 37anti-parallel
Strand 3
D
85 89anti-parallel
Strand 4
D
96 97anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
42 44first strand
Strand 2
D
50 52anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
50 53first strand
Strand 2
E
36 39anti-parallel
Strand 3
E
21 27anti-parallel
Strand 4
E
7 10anti-parallel
Strand 5
E
58 60anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
28 29first strand
Strand 2
F
84 85anti-parallel
Strand 3
F
91 92anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
6 7first strand
Strand 2
L
17 18anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
132 134first strand
Strand 2
Z
141 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il