Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y8G entry

There are 4 chains in PDB entry 7Y8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 302ARG 548
C
 ALA 601GLN 608
B
 GLY 304ARG 548
D
 ALA 601GLN 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7Y8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
305 310Right-handed 310
Helix 2
AA2
A
311 322Right-handed alpha
Helix 3
AA3
A
338 363Right-handed alpha
Helix 4
AA4
A
371 395Right-handed alpha
Helix 5
AA5
A
411 416Right-handed 310
Helix 6
AA6
A
420 439Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
471 493Right-handed alpha
Helix 9
AA9
A
496 532Right-handed alpha
Helix 10
AB1
A
537 547Right-handed alpha
Helix 11
AB2
C
602 608Right-handed alpha
Helix 12
AB3
B
305 310Right-handed 310
Helix 13
AB4
B
311 323Right-handed alpha
Helix 14
AB5
B
341 363Right-handed alpha
Helix 15
AB6
B
371 395Right-handed alpha
Helix 16
AB7
B
411 416Right-handed alpha
Helix 17
AB8
B
420 439Right-handed alpha
Helix 18
AB9
B
441 456Right-handed alpha
Helix 19
AC1
B
457 461Right-handed 310
Helix 20
AC2
B
465 493Right-handed alpha
Helix 21
AC3
B
496 530Right-handed alpha
Helix 22
AC4
B
537 547Right-handed alpha
Helix 23
AC5
D
602 608Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7Y8G. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
408 410anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 405first strand
Strand 2
B
408 410anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il