Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y8I entry

There are 6 chains in PDB entry 7Y8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 495LYS 587
B
 SER 494GLU 588
C
 ALA 493LYS 587
D
 ALA 493GLU 588
E
 GLY 492GLU 588
F
 GLY 492LYS 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 7Y8I. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
521 523Right-handed 310
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There are 13 sheets in PDB entry 7Y8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
510 515anti-parallel
Strand 3
A
499 503anti-parallel
Strand 4
C
578 583parallel
Strand 5
C
561 570anti-parallel
Strand 6
C
527 534anti-parallel
Strand 7
C
540 541anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
510 515anti-parallel
Strand 3
A
499 503anti-parallel
Strand 4
C
578 583parallel
Strand 5
C
561 570anti-parallel
Strand 6
C
573 574anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
528 534anti-parallel
Strand 3
A
561 570anti-parallel
Strand 4
A
573 574anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
528 534anti-parallel
Strand 3
A
561 570anti-parallel
Strand 4
A
578 583anti-parallel
Strand 5
C
501 503parallel
Strand 6
C
510 513anti-parallel
Strand 7
C
550 553anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 553first strand
Strand 2
B
510 515anti-parallel
Strand 3
B
499 503anti-parallel
Strand 4
F
578 583parallel
Strand 5
F
561 570anti-parallel
Strand 6
F
528 534anti-parallel
Strand 7
F
540 542anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 553first strand
Strand 2
B
510 515anti-parallel
Strand 3
B
499 503anti-parallel
Strand 4
F
578 583parallel
Strand 5
F
561 570anti-parallel
Strand 6
F
573 574anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 542first strand
Strand 2
B
528 534anti-parallel
Strand 3
B
561 568anti-parallel
Strand 4
B
578 583anti-parallel
Strand 5
F
499 503parallel
Strand 6
F
510 515anti-parallel
Strand 7
F
550 553anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
499 503first strand
Strand 2
D
510 515anti-parallel
Strand 3
D
550 553anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
540 542first strand
Strand 2
D
525 534anti-parallel
Strand 3
D
561 570anti-parallel
Strand 4
D
573 574anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
540 542first strand
Strand 2
D
525 534anti-parallel
Strand 3
D
561 570anti-parallel
Strand 4
D
578 583anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
501 503first strand
Strand 2
E
510 513anti-parallel
Strand 3
E
550 553anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
540 542first strand
Strand 2
E
527 534anti-parallel
Strand 3
E
561 570anti-parallel
Strand 4
E
573 574anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
540 542first strand
Strand 2
E
527 534anti-parallel
Strand 3
E
561 570anti-parallel
Strand 4
E
578 583anti-parallel
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