Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y8L entry

There are 4 chains in PDB entry 7Y8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PRO 289
B
 ARG 3PRO 289
C
 ARG 3LYS 288
D
 PRO 4LYS 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 7Y8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
36 39Right-handed 310
Helix 3
AA3
A
40 47Right-handed alpha
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
70 79Right-handed alpha
Helix 6
AA6
A
81 85Right-handed 310
Helix 7
AA7
A
97 111Right-handed alpha
Helix 8
AA8
A
123 127Right-handed 310
Helix 9
AA9
A
139 152Right-handed alpha
Helix 10
AB1
A
163 193Right-handed alpha
Helix 11
AB2
A
197 211Right-handed alpha
Helix 12
AB3
A
211 226Right-handed alpha
Helix 13
AB4
A
234 252Right-handed alpha
Helix 14
AB5
A
256 272Right-handed alpha
Helix 15
AB6
A
278 288Right-handed 310
Helix 16
AB7
B
13 26Right-handed alpha
Helix 17
AB8
B
36 39Right-handed 310
Helix 18
AB9
B
40 47Right-handed alpha
Helix 19
AC1
B
53 61Right-handed alpha
Helix 20
AC2
B
71 78Right-handed alpha
Helix 21
AC3
B
82 86Right-handed 310
Helix 22
AC4
B
97 110Right-handed alpha
Helix 23
AC5
B
123 127Right-handed 310
Helix 24
AC6
B
139 152Right-handed alpha
Helix 25
AC7
B
163 193Right-handed alpha
Helix 26
AC8
B
197 211Right-handed alpha
Helix 27
AC9
B
211 226Right-handed alpha
Helix 28
AD1
B
234 252Right-handed alpha
Helix 29
AD2
B
256 272Right-handed alpha
Helix 30
AD3
B
278 281Right-handed 310
Helix 31
AD4
B
282 287Right-handed alpha
Helix 32
AD5
C
13 27Right-handed alpha
Helix 33
AD6
C
36 40Right-handed 310
Helix 34
AD7
C
41 47Right-handed alpha
Helix 35
AD8
C
53 61Right-handed alpha
Helix 36
AD9
C
70 79Right-handed alpha
Helix 37
AE1
C
80 86Right-handed 310
Helix 38
AE2
C
97 111Right-handed alpha
Helix 39
AE3
C
123 127Right-handed 310
Helix 40
AE4
C
139 145Right-handed alpha
Helix 41
AE5
C
146 151Right-handed alpha
Helix 42
AE6
C
163 193Right-handed alpha
Helix 43
AE7
C
197 211Right-handed alpha
Helix 44
AE8
C
211 224Right-handed alpha
Helix 45
AE9
C
234 252Right-handed alpha
Helix 46
AF1
C
256 272Right-handed alpha
Helix 47
AF2
C
278 281Right-handed 310
Helix 48
AF3
C
282 287Right-handed alpha
Helix 49
AF4
D
13 27Right-handed alpha
Helix 50
AF5
D
36 39Right-handed 310
Helix 51
AF6
D
40 47Right-handed alpha
Helix 52
AF7
D
53 61Right-handed alpha
Helix 53
AF8
D
71 79Right-handed alpha
Helix 54
AF9
D
80 86Right-handed 310
Helix 55
AG1
D
97 111Right-handed alpha
Helix 56
AG2
D
123 127Right-handed 310
Helix 57
AG3
D
139 151Right-handed alpha
Helix 58
AG4
D
163 193Right-handed alpha
Helix 59
AG5
D
197 211Right-handed alpha
Helix 60
AG6
D
211 225Right-handed alpha
Helix 61
AG7
D
234 253Right-handed alpha
Helix 62
AG8
D
256 272Right-handed alpha
Helix 63
AG9
D
278 281Right-handed 310
Helix 64
AH1
D
282 288Right-handed alpha
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There are 4 sheets in PDB entry 7Y8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
7 10parallel
Strand 3
A
63 66parallel
Strand 4
A
89 92parallel
Strand 5
A
114 120parallel
Strand 6
A
133 137anti-parallel
Strand 7
A
155 160parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
30 33parallel
Strand 3
B
7 10parallel
Strand 4
B
63 66parallel
Strand 5
B
89 92parallel
Strand 6
B
114 120parallel
Strand 7
B
133 137anti-parallel
Strand 8
B
155 158parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
30 33parallel
Strand 3
C
7 10parallel
Strand 4
C
63 66parallel
Strand 5
C
89 92parallel
Strand 6
C
114 120parallel
Strand 7
C
133 137anti-parallel
Strand 8
C
155 158parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 50first strand
Strand 2
D
30 33parallel
Strand 3
D
7 10parallel
Strand 4
D
63 66parallel
Strand 5
D
89 92parallel
Strand 6
D
114 120parallel
Strand 7
D
133 137anti-parallel
Strand 8
D
155 160parallel
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