Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y8O entry

There are 2 chains in PDB entry 7Y8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4SER 290
B
 PRO 4PRO 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7Y8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
36 39Right-handed 310
Helix 3
AA3
A
40 46Right-handed alpha
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
71 79Right-handed alpha
Helix 6
AA6
A
81 86Right-handed 310
Helix 7
AA7
A
97 111Right-handed alpha
Helix 8
AA8
A
123 127Right-handed 310
Helix 9
AA9
A
139 151Right-handed alpha
Helix 10
AB1
A
163 193Right-handed alpha
Helix 11
AB2
A
197 211Right-handed alpha
Helix 12
AB3
A
211 225Right-handed alpha
Helix 13
AB4
A
234 252Right-handed alpha
Helix 14
AB5
A
256 272Right-handed alpha
Helix 15
AB6
A
278 280Right-handed 310
Helix 16
AB7
A
281 287Right-handed alpha
Helix 17
AB8
B
13 27Right-handed alpha
Helix 18
AB9
B
36 39Right-handed 310
Helix 19
AC1
B
40 46Right-handed alpha
Helix 20
AC2
B
53 60Right-handed alpha
Helix 21
AC3
B
70 79Right-handed alpha
Helix 22
AC4
B
81 86Right-handed 310
Helix 23
AC5
B
97 111Right-handed alpha
Helix 24
AC6
B
123 127Right-handed 310
Helix 25
AC7
B
139 151Right-handed alpha
Helix 26
AC8
B
164 193Right-handed alpha
Helix 27
AC9
B
197 211Right-handed alpha
Helix 28
AD1
B
211 225Right-handed alpha
Helix 29
AD2
B
234 252Right-handed alpha
Helix 30
AD3
B
256 272Right-handed alpha
Helix 31
AD4
B
278 281Right-handed 310
Helix 32
AD5
B
282 287Right-handed alpha
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There are 2 sheets in PDB entry 7Y8O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
30 33parallel
Strand 3
A
7 10parallel
Strand 4
A
63 66parallel
Strand 5
A
89 92parallel
Strand 6
A
114 120parallel
Strand 7
A
133 137anti-parallel
Strand 8
A
155 160parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
30 33parallel
Strand 3
B
7 10parallel
Strand 4
B
63 66parallel
Strand 5
B
89 92parallel
Strand 6
B
114 120parallel
Strand 7
B
133 137anti-parallel
Strand 8
B
155 160parallel
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