Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y8R entry

There are 27 chains in PDB entry 7Y8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ALA 135
B	GLY 9	GLY 102
C	ALA 14	PRO 117
D	LYS 30	LYS 125
E	PRO 38	ALA 135
F	LYS 16	GLY 102
G	ARG 11	LYS 118
H	ARG 31	SER 124
Z	UNK 112	UNK 140
I	GLU 365	SER 1345
J	ASP 2	ARG 372
K	GLY 12	GLU 417
L	LYS 7	THR 1821
M	THR 9	THR 381
N	THR 418	GLN 952
a	UNK -13	UNK -2
O	HIS 423	GLN 952
P	LYS 127	GLY 511
Q	PHE 186	LEU 276
R	VAL 196	LYS 239
S	GLU 130	GLN 599
T	UNK 1	UNK 22
U	HIS 1514	GLY 1524
V	UNK 2	UNK 1060
X	G -6	G 158
Y	C -10	C 154
W	UNK 1	UNK 24

There are201 helices in PDB entry 7Y8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	30	41	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	16	21	Right-handed alpha
Helix 9	AA9	C	26	37	Right-handed alpha
Helix 10	AB1	C	45	72	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	90	97	Right-handed alpha
Helix 13	AB4	D	37	49	Right-handed alpha
Helix 14	AB5	D	55	84	Right-handed alpha
Helix 15	AB6	D	90	102	Right-handed alpha
Helix 16	AB7	D	103	124	Right-handed alpha
Helix 17	AB8	E	44	57	Right-handed alpha
Helix 18	AB9	E	63	79	Right-handed alpha
Helix 19	AC1	E	85	114	Right-handed alpha
Helix 20	AC2	E	120	132	Right-handed alpha
Helix 21	AC3	F	24	29	Right-handed 310
Helix 22	AC4	F	30	41	Right-handed alpha
Helix 23	AC5	F	49	76	Right-handed alpha
Helix 24	AC6	F	82	94	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	26	37	Right-handed alpha
Helix 27	AC9	G	45	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	90	97	Right-handed alpha
Helix 30	AD3	G	112	116	Right-handed 310
Helix 31	AD4	H	37	49	Right-handed alpha
Helix 32	AD5	H	55	84	Right-handed alpha
Helix 33	AD6	H	90	102	Right-handed alpha
Helix 34	AD7	H	104	124	Right-handed alpha
Helix 35	AD8	Z	115	125	Right-handed alpha
Helix 36	AD9	Z	129	140	Right-handed alpha
Helix 37	AE1	I	366	386	Right-handed alpha
Helix 38	AE2	I	394	423	Right-handed alpha
Helix 39	AE3	I	445	532	Right-handed alpha
Helix 40	AE4	I	549	570	Right-handed alpha
Helix 41	AE5	I	755	771	Right-handed alpha
Helix 42	AE6	I	784	799	Right-handed alpha
Helix 43	AE7	I	811	826	Right-handed alpha
Helix 44	AE8	I	837	843	Right-handed alpha
Helix 45	AE9	I	844	851	Right-handed alpha
Helix 46	AF1	I	859	866	Right-handed alpha
Helix 47	AF2	I	866	872	Right-handed alpha
Helix 48	AF3	I	883	887	Right-handed 310
Helix 49	AF4	I	891	899	Right-handed alpha
Helix 50	AF5	I	917	929	Right-handed alpha
Helix 51	AF6	I	936	941	Right-handed alpha
Helix 52	AF7	I	959	971	Right-handed alpha
Helix 53	AF8	I	980	985	Right-handed alpha
Helix 54	AF9	I	1001	1012	Right-handed alpha
Helix 55	AG1	I	1039	1048	Right-handed alpha
Helix 56	AG2	I	1049	1051	Right-handed 310
Helix 57	AG3	I	1052	1061	Right-handed alpha
Helix 58	AG4	I	1079	1095	Right-handed alpha
Helix 59	AG5	I	1105	1120	Right-handed alpha
Helix 60	AG6	I	1131	1144	Right-handed alpha
Helix 61	AG7	I	1179	1189	Right-handed alpha
Helix 62	AG8	I	1209	1230	Right-handed alpha
Helix 63	AG9	I	1241	1243	Right-handed 310
Helix 64	AH1	I	1244	1253	Right-handed alpha
Helix 65	AH2	I	1298	1307	Right-handed alpha
Helix 66	AH3	I	1309	1330	Right-handed alpha
Helix 67	AH4	J	2	6	Right-handed 310
Helix 68	AH5	J	55	61	Right-handed alpha
Helix 69	AH6	J	62	64	Right-handed 310
Helix 70	AH7	J	81	97	Right-handed alpha
Helix 71	AH8	J	112	128	Right-handed alpha
Helix 72	AH9	J	137	146	Right-handed alpha
Helix 73	AI1	J	181	197	Right-handed alpha
Helix 74	AI2	J	202	213	Right-handed alpha
Helix 75	AI3	J	222	229	Right-handed alpha
Helix 76	AI4	J	233	237	Right-handed 310
Helix 77	AI5	J	252	257	Right-handed alpha
Helix 78	AI6	J	258	261	Right-handed 310
Helix 79	AI7	J	274	284	Right-handed alpha
Helix 80	AI8	J	288	295	Right-handed alpha
Helix 81	AI9	J	308	321	Right-handed alpha
Helix 82	AJ1	J	337	347	Right-handed alpha
Helix 83	AJ2	J	352	356	Right-handed 310
Helix 84	AJ3	J	358	363	Right-handed alpha
Helix 85	AJ4	J	366	371	Right-handed alpha
Helix 86	AJ5	K	71	75	Right-handed 310
Helix 87	AJ6	K	95	111	Right-handed alpha
Helix 88	AJ7	K	129	145	Right-handed alpha
Helix 89	AJ8	K	153	162	Right-handed alpha
Helix 90	AJ9	K	189	192	Right-handed 310
Helix 91	AK1	K	198	208	Right-handed alpha
Helix 92	AK2	K	252	264	Right-handed alpha
Helix 93	AK3	K	325	334	Right-handed alpha
Helix 94	AK4	K	340	346	Right-handed alpha
Helix 95	AK5	K	353	357	Right-handed 310
Helix 96	AK6	K	361	372	Right-handed alpha
Helix 97	AK7	K	382	386	Right-handed 310
Helix 98	AK8	K	387	399	Right-handed alpha
Helix 99	AK9	K	400	402	Right-handed 310
Helix 100	AL1	K	403	409	Right-handed alpha
Helix 101	AL2	K	412	416	Right-handed 310
Helix 102	AL3	L	10	16	Right-handed alpha
Helix 103	AL4	L	16	31	Right-handed alpha
Helix 104	AL5	L	46	57	Right-handed alpha
Helix 105	AL6	L	59	67	Right-handed alpha
Helix 106	AL7	L	68	76	Right-handed alpha
Helix 107	AL8	L	85	97	Right-handed alpha
Helix 108	AL9	L	100	105	Right-handed alpha
Helix 109	AM1	L	140	146	Right-handed alpha
Helix 110	AM2	L	156	167	Right-handed alpha
Helix 111	AM3	L	169	184	Right-handed alpha
Helix 112	AM4	L	192	196	Right-handed 310
Helix 113	AM5	L	197	206	Right-handed alpha
Helix 114	AM6	L	217	224	Right-handed alpha
Helix 115	AM7	L	233	240	Right-handed alpha
Helix 116	AM8	L	243	251	Right-handed alpha
Helix 117	AM9	L	280	297	Right-handed alpha
Helix 118	AN1	L	299	309	Right-handed alpha
Helix 119	AN2	L	310	322	Right-handed alpha
Helix 120	AN3	L	324	339	Right-handed alpha
Helix 121	AN4	L	340	342	Right-handed 310
Helix 122	AN5	L	349	364	Right-handed alpha
Helix 123	AN6	L	367	382	Right-handed alpha
Helix 124	AN7	L	387	395	Right-handed alpha
Helix 125	AN8	L	396	406	Right-handed alpha
Helix 126	AN9	L	411	427	Right-handed alpha
Helix 127	AO1	L	429	438	Right-handed alpha
Helix 128	AO2	L	441	452	Right-handed alpha
Helix 129	AO3	L	453	457	Right-handed 310
Helix 130	AO4	L	468	479	Right-handed alpha
Helix 131	AO5	L	1762	1783	Right-handed alpha
Helix 132	AO6	L	1783	1793	Right-handed alpha
Helix 133	AO7	L	1793	1803	Right-handed alpha
Helix 134	AO8	L	1808	1821	Right-handed alpha
Helix 135	AO9	M	29	37	Right-handed alpha
Helix 136	AP1	M	41	46	Right-handed alpha
Helix 137	AP2	M	56	67	Right-handed alpha
Helix 138	AP3	M	83	87	Right-handed 310
Helix 139	AP4	M	93	102	Right-handed alpha
Helix 140	AP5	M	172	182	Right-handed alpha
Helix 141	AP6	M	214	227	Right-handed alpha
Helix 142	AP7	M	229	247	Right-handed alpha
Helix 143	AP8	M	289	302	Right-handed alpha
Helix 144	AP9	M	306	323	Right-handed alpha
Helix 145	AQ1	M	344	350	Right-handed alpha
Helix 146	AQ2	M	357	381	Right-handed alpha
Helix 147	AQ3	N	439	446	Right-handed alpha
Helix 148	AQ4	N	447	452	Right-handed alpha
Helix 149	AQ5	N	458	476	Right-handed alpha
Helix 150	AQ6	N	482	491	Right-handed alpha
Helix 151	AQ7	N	493	507	Right-handed alpha
Helix 152	AQ8	N	603	616	Right-handed alpha
Helix 153	AQ9	N	622	627	Right-handed alpha
Helix 154	AR1	N	631	640	Right-handed alpha
Helix 155	AR2	N	672	684	Right-handed alpha
Helix 156	AR3	N	859	951	Right-handed alpha
Helix 157	AR4	O	440	446	Right-handed alpha
Helix 158	AR5	O	446	451	Right-handed alpha
Helix 159	AR6	O	458	476	Right-handed alpha
Helix 160	AR7	O	484	489	Right-handed alpha
Helix 161	AR8	O	493	507	Right-handed alpha
Helix 162	AR9	O	536	540	Right-handed 310
Helix 163	AS1	O	606	613	Right-handed alpha
Helix 164	AS2	O	620	628	Right-handed alpha
Helix 165	AS3	O	633	642	Right-handed alpha
Helix 166	AS4	O	671	682	Right-handed alpha
Helix 167	AS5	O	685	705	Right-handed alpha
Helix 168	AS6	O	868	952	Right-handed alpha
Helix 169	AS7	P	143	174	Right-handed alpha
Helix 170	AS8	P	218	225	Right-handed alpha
Helix 171	AS9	P	232	236	Right-handed alpha
Helix 172	AT1	P	245	250	Right-handed alpha
Helix 173	AT2	P	298	306	Right-handed alpha
Helix 174	AT3	P	312	327	Right-handed alpha
Helix 175	AT4	P	340	348	Right-handed alpha
Helix 176	AT5	P	353	355	Right-handed 310
Helix 177	AT6	P	356	365	Right-handed alpha
Helix 178	AT7	P	380	384	Right-handed 310
Helix 179	AT8	P	399	447	Right-handed alpha
Helix 180	AT9	P	447	465	Right-handed alpha
Helix 181	AU1	P	483	511	Right-handed alpha
Helix 182	AU2	Q	188	195	Right-handed 310
Helix 183	AU3	Q	196	207	Right-handed alpha
Helix 184	AU4	Q	221	275	Right-handed alpha
Helix 185	AU5	R	197	222	Right-handed alpha
Helix 186	AU6	S	134	150	Right-handed alpha
Helix 187	AU7	S	167	172	Right-handed alpha
Helix 188	AU8	S	177	187	Right-handed alpha
Helix 189	AU9	S	192	211	Right-handed alpha
Helix 190	AV1	S	215	232	Right-handed alpha
Helix 191	AV2	S	405	409	Right-handed 310
Helix 192	AV3	S	422	433	Right-handed alpha
Helix 193	AV4	S	537	565	Right-handed alpha
Helix 194	AV5	S	579	599	Right-handed alpha
Helix 195	AV6	U	1516	1524	Right-handed alpha
Helix 196	AV7	V	3	11	Right-handed alpha
Helix 197	AV8	V	19	33	Right-handed alpha
Helix 198	AV9	V	1003	1017	Right-handed alpha
Helix 199	AW1	V	1032	1034	Right-handed 310
Helix 200	AW2	V	1035	1042	Right-handed alpha
Helix 201	AW3	W	3	10	Right-handed alpha

There are 23 sheets in PDB entry 7Y8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	C	100	101	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	831	833	first strand
Strand 2	I	855	858	parallel
Strand 3	I	806	809	parallel
Strand 4	I	878	881	parallel
Strand 5	I	908	909	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	992	998	first strand
Strand 2	I	1200	1206	parallel
Strand 3	I	1170	1173	parallel
Strand 4	I	1099	1103	parallel
Strand 5	I	1151	1155	parallel
Strand 6	I	1124	1126	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	21	first strand
Strand 2	J	8	10	anti-parallel
Strand 3	J	103	107	parallel
Strand 4	J	132	136	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	176	177	first strand
Strand 2	J	161	165	anti-parallel
Strand 3	J	150	155	anti-parallel
Strand 4	J	296	301	parallel
Strand 5	J	328	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	239	240	first strand
Strand 2	J	248	249	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	14	17	first strand
Strand 2	K	23	27	anti-parallel
Strand 3	K	35	37	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	88	89	first strand
Strand 2	K	92	93	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	186	187	first strand
Strand 2	K	178	183	anti-parallel
Strand 3	K	193	194	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	186	187	first strand
Strand 2	K	178	183	anti-parallel
Strand 3	K	167	171	anti-parallel
Strand 4	K	348	351	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	16	20	first strand
Strand 2	M	24	28	anti-parallel
Strand 3	M	89	92	anti-parallel
Strand 4	M	52	54	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	186	191	first strand
Strand 2	M	202	207	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	194	195	first strand
Strand 2	M	198	199	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	262	267	first strand
Strand 2	M	276	281	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	178	180	first strand
Strand 2	P	394	397	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	185	188	first strand
Strand 2	P	207	212	anti-parallel
Strand 3	P	272	274	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	257	259	first strand
Strand 2	P	237	243	anti-parallel
Strand 3	P	280	288	anti-parallel
Strand 4	P	371	377	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	294	296	first strand
Strand 2	P	309	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8R