Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y8U entry

There are 2 chains in PDB entry 7Y8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLN -2VAL 378
F
 LEU 2VAL 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7Y8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
31 51Right-handed alpha
Helix 2
AA2
E
79 83Right-handed 310
Helix 3
AA3
E
89 99Right-handed alpha
Helix 4
AA4
E
101 125Right-handed alpha
Helix 5
AA5
E
128 141Right-handed alpha
Helix 6
AA6
E
142 151Right-handed 310
Helix 7
AA7
E
152 158Right-handed alpha
Helix 8
AA8
E
160 165Right-handed 310
Helix 9
AA9
E
166 177Right-handed alpha
Helix 10
AB1
E
233 239Right-handed alpha
Helix 11
AB2
E
239 250Right-handed alpha
Helix 12
AB3
E
254 262Right-handed alpha
Helix 13
AB4
E
291 305Right-handed alpha
Helix 14
AB5
E
309 330Right-handed alpha
Helix 15
AB6
E
330 341Right-handed alpha
Helix 16
AB7
E
342 346Right-handed 310
Helix 17
AB8
E
347 357Right-handed alpha
Helix 18
AB9
E
359 369Right-handed alpha
Helix 19
AC1
F
3 13Right-handed alpha
Helix 20
AC2
F
51 60Right-handed alpha
Helix 21
AC3
F
68 75Right-handed alpha
Helix 22
AC4
F
95 97Right-handed 310
Helix 23
AC5
F
98 111Right-handed alpha
Helix 24
AC6
F
116 133Right-handed alpha
Helix 25
AC7
F
146 154Right-handed alpha
Helix 26
AC8
F
155 160Right-handed alpha
Helix 27
AC9
F
163 175Right-handed alpha
Helix 28
AD1
F
196 201Right-handed 310
Helix 29
AD2
F
232 254Right-handed alpha
Helix 30
AD3
F
279 291Right-handed alpha
Helix 31
AD4
F
293 316Right-handed alpha
Helix 32
AD5
F
318 329Right-handed alpha
Helix 33
AD6
F
335 345Right-handed alpha
Helix 34
AD7
F
347 364Right-handed alpha
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There are 5 sheets in PDB entry 7Y8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
189 191anti-parallel
Strand 3
E
179 184anti-parallel
Strand 4
E
14 21anti-parallel
Strand 5
E
69 77anti-parallel
Strand 6
E
55 64anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
209 212first strand
Strand 2
E
370 378parallel
Strand 3
E
222 229anti-parallel
Strand 4
E
280 285anti-parallel
Strand 5
E
270 275anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 19first strand
Strand 2
F
22 27anti-parallel
Strand 3
F
180 185parallel
Strand 4
F
35 41anti-parallel
Strand 5
F
88 94anti-parallel
Strand 6
F
79 83anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
62 63first strand
Strand 2
F
66 67anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
223 228first strand
Strand 2
F
271 276anti-parallel
Strand 3
F
260 263anti-parallel
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