Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y8Y entry

There are 4 chains in PDB entry 7Y8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 14	LEU 716
A	ASP 5	PRO 1690
D	G -19	A 18
E	C -16	C 2

There are 69 helices in PDB entry 7Y8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	14	30	Right-handed alpha
Helix 2	AA2	B	31	33	Right-handed 310
Helix 3	AA3	B	37	59	Right-handed alpha
Helix 4	AA4	B	67	79	Right-handed alpha
Helix 5	AA5	B	90	109	Right-handed alpha
Helix 6	AA6	B	114	136	Right-handed alpha
Helix 7	AA7	B	141	155	Right-handed alpha
Helix 8	AA8	B	163	177	Right-handed alpha
Helix 9	AA9	B	180	182	Right-handed 310
Helix 10	AB1	B	183	190	Right-handed alpha
Helix 11	AB2	B	194	207	Right-handed alpha
Helix 12	AB3	B	209	223	Right-handed alpha
Helix 13	AB4	B	224	226	Right-handed 310
Helix 14	AB5	B	231	246	Right-handed alpha
Helix 15	AB6	B	250	267	Right-handed alpha
Helix 16	AB7	B	282	297	Right-handed alpha
Helix 17	AB8	B	303	322	Right-handed alpha
Helix 18	AB9	B	327	333	Right-handed alpha
Helix 19	AC1	B	343	357	Right-handed alpha
Helix 20	AC2	B	435	448	Right-handed alpha
Helix 21	AC3	B	454	469	Right-handed alpha
Helix 22	AC4	B	470	474	Right-handed 310
Helix 23	AC5	B	489	495	Right-handed 310
Helix 24	AC6	B	496	500	Right-handed 310
Helix 25	AC7	B	521	525	Right-handed 310
Helix 26	AC8	B	569	573	Right-handed 310
Helix 27	AC9	B	592	595	Right-handed 310
Helix 28	AD1	B	607	614	Right-handed alpha
Helix 29	AD2	B	644	653	Right-handed alpha
Helix 30	AD3	B	665	679	Right-handed alpha
Helix 31	AD4	B	683	691	Right-handed alpha
Helix 32	AD5	B	699	707	Right-handed alpha
Helix 33	AD6	A	27	31	Right-handed 310
Helix 34	AD7	A	32	38	Right-handed alpha
Helix 35	AD8	A	59	78	Right-handed alpha
Helix 36	AD9	A	127	133	Right-handed alpha
Helix 37	AE1	A	216	227	Right-handed alpha
Helix 38	AE2	A	267	287	Right-handed alpha
Helix 39	AE3	A	292	297	Right-handed alpha
Helix 40	AE4	A	299	306	Right-handed 310
Helix 41	AE5	A	308	314	Right-handed alpha
Helix 42	AE6	A	342	345	Right-handed 310
Helix 43	AE7	A	346	351	Right-handed alpha
Helix 44	AE8	A	354	375	Right-handed alpha
Helix 45	AE9	A	434	438	Right-handed 310
Helix 46	AF1	A	471	488	Right-handed alpha
Helix 47	AF2	A	503	510	Right-handed alpha
Helix 48	AF3	A	569	580	Right-handed alpha
Helix 49	AF4	A	617	625	Right-handed alpha
Helix 50	AF5	A	626	628	Right-handed 310
Helix 51	AF6	A	630	636	Right-handed alpha
Helix 52	AF7	A	665	667	Right-handed 310
Helix 53	AF8	A	686	693	Right-handed alpha
Helix 54	AF9	A	709	712	Right-handed 310
Helix 55	AG1	A	723	740	Right-handed alpha
Helix 56	AG2	A	752	758	Right-handed alpha
Helix 57	AG3	A	776	780	Right-handed 310
Helix 58	AG4	A	831	848	Right-handed alpha
Helix 59	AG5	A	855	859	Right-handed 310
Helix 60	AG6	A	873	884	Right-handed alpha
Helix 61	AG7	A	999	1016	Right-handed alpha
Helix 62	AG8	A	1414	1421	Right-handed alpha
Helix 63	AG9	A	1486	1494	Right-handed alpha
Helix 64	AH1	A	1528	1540	Right-handed alpha
Helix 65	AH2	A	1552	1556	Right-handed 310
Helix 66	AH3	A	1583	1603	Right-handed alpha
Helix 67	AH4	A	1619	1628	Right-handed alpha
Helix 68	AH5	A	1664	1668	Right-handed 310
Helix 69	AH6	A	1673	1682	Right-handed alpha

There are 20 sheets in PDB entry 7Y8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	413	420	anti-parallel
Strand 3	B	400	408	anti-parallel
Strand 4	B	483	487	parallel
Strand 5	B	515	518	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	579	583	parallel
Strand 3	B	622	624	parallel
Strand 4	B	657	660	parallel
Strand 5	B	709	712	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	587	first strand
Strand 2	B	597	599	anti-parallel
Strand 3	B	605	606	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	42	46	parallel
Strand 3	A	53	58	anti-parallel
Strand 4	A	156	158	anti-parallel
Strand 5	A	204	211	anti-parallel
Strand 6	A	167	168	first strand

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	204	211	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	53	58	anti-parallel
Strand 5	A	6	14	first strand
Strand 6	A	233	239	anti-parallel
Strand 7	A	229	230	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	404	405	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	181	first strand
Strand 2	A	188	197	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	613	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	613	anti-parallel
Strand 5	A	647	648	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	533	first strand
Strand 2	A	540	550	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	767	769	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	772	774	anti-parallel
Strand 4	A	818	827	anti-parallel
Strand 5	A	669	678	anti-parallel
Strand 6	A	863	868	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	713	714	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	789	first strand
Strand 2	A	805	807	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	925	927	first strand
Strand 2	A	1478	1480	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	997	998	first strand
Strand 2	A	1434	1438	anti-parallel
Strand 3	A	1517	1527	anti-parallel
Strand 4	A	950	960	anti-parallel
Strand 5	A	1559	1570	anti-parallel
Strand 6	A	1547	1548	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1517	1527	anti-parallel
Strand 3	A	950	960	anti-parallel
Strand 4	A	1559	1570	anti-parallel
Strand 5	A	1579	1581	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1453	1455	first strand
Strand 2	A	1508	1510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y8Y