Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y96 entry

There are 4 chains in PDB entry 7Y96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 VAL 68ALA 322
B
 SER 2LEU 64
B
 VAL 68ALA 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7Y96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
56 62Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
75 81Right-handed 310
Helix 5
AA5
A
82 88Right-handed alpha
Helix 6
AA6
B
5 9Right-handed 310
Helix 7
AA7
B
56 62Right-handed alpha
Helix 8
AA8
B
68 72Right-handed 310
Helix 9
AA9
B
75 79Right-handed 310
Helix 10
AB1
B
82 88Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7Y96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
312 321anti-parallel
Strand 5
A
294 303anti-parallel
Strand 6
A
245 250anti-parallel
Strand 7
A
255 265anti-parallel
Strand 8
A
271 282anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 127anti-parallel
Strand 12
A
11 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
161 166anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
173 179anti-parallel
Strand 4
A
226 231anti-parallel
Strand 5
A
210 220anti-parallel
Strand 6
A
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
312 321anti-parallel
Strand 5
B
294 303anti-parallel
Strand 6
B
245 250anti-parallel
Strand 7
B
255 265anti-parallel
Strand 8
B
271 282anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
11 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 158first strand
Strand 2
B
161 167anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
182 185anti-parallel
Strand 3
B
188 192anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 220first strand
Strand 2
B
226 231anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il