Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y9G entry

There are 2 chains in PDB entry 7Y9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32PRO 375
B
 PRO 32PRO 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7Y9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 68Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
73 82Right-handed alpha
Helix 4
AA4
A
83 86Right-handed 310
Helix 5
AA5
A
87 93Right-handed alpha
Helix 6
AA6
A
97 119Right-handed alpha
Helix 7
AA7
A
120 125Right-handed alpha
Helix 8
AA8
A
127 144Right-handed alpha
Helix 9
AA9
A
145 147Right-handed 310
Helix 10
AB1
A
153 168Right-handed alpha
Helix 11
AB2
A
171 199Right-handed alpha
Helix 12
AB3
A
203 215Right-handed alpha
Helix 13
AB4
A
216 229Right-handed alpha
Helix 14
AB5
A
232 239Right-handed alpha
Helix 15
AB6
A
241 268Right-handed alpha
Helix 16
AB7
A
272 280Right-handed alpha
Helix 17
AB8
A
284 313Right-handed alpha
Helix 18
AB9
A
318 342Right-handed alpha
Helix 19
AC1
A
342 347Right-handed alpha
Helix 20
AC2
B
51 68Right-handed alpha
Helix 21
AC3
B
69 71Right-handed 310
Helix 22
AC4
B
73 83Right-handed alpha
Helix 23
AC5
B
84 86Right-handed 310
Helix 24
AC6
B
87 93Right-handed alpha
Helix 25
AC7
B
97 119Right-handed alpha
Helix 26
AC8
B
155 168Right-handed alpha
Helix 27
AC9
B
171 198Right-handed alpha
Helix 28
AD1
B
203 215Right-handed alpha
Helix 29
AD2
B
216 229Right-handed alpha
Helix 30
AD3
B
232 239Right-handed alpha
Helix 31
AD4
B
241 260Right-handed alpha
Helix 32
AD5
B
260 267Right-handed alpha
Helix 33
AD6
B
272 280Right-handed alpha
Helix 34
AD7
B
284 313Right-handed alpha
Helix 35
AD8
B
318 342Right-handed alpha
Helix 36
AD9
B
342 347Right-handed alpha
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There are 2 sheets in PDB entry 7Y9G. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
358 361anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
358 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il