Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y9K entry

There are 2 chains in PDB entry 7Y9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LEU 456
B
 LYS 4GLY 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7Y9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
17 22Right-handed 310
Helix 3
AA3
A
25 38Right-handed alpha
Helix 4
AA4
A
55 63Right-handed alpha
Helix 5
AA5
A
73 84Right-handed alpha
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
A
94 105Right-handed alpha
Helix 8
AA8
A
106 109Right-handed 310
Helix 9
AA9
A
110 111Right-handed 310
Helix 10
AB1
A
112 133Right-handed alpha
Helix 11
AB2
A
142 160Right-handed alpha
Helix 12
AB3
A
164 168Right-handed 310
Helix 13
AB4
A
172 188Right-handed alpha
Helix 14
AB5
A
189 191Right-handed 310
Helix 15
AB6
A
196 198Right-handed 310
Helix 16
AB7
A
199 228Right-handed alpha
Helix 17
AB8
A
233 241Right-handed alpha
Helix 18
AB9
A
251 283Right-handed alpha
Helix 19
AC1
A
284 299Right-handed alpha
Helix 20
AC2
A
305 311Right-handed alpha
Helix 21
AC3
A
312 326Right-handed alpha
Helix 22
AC4
A
358 362Right-handed alpha
Helix 23
AC5
A
364 369Right-handed alpha
Helix 24
AC6
A
376 381Right-handed 310
Helix 25
AC7
A
382 386Right-handed 310
Helix 26
AC8
A
396 400Right-handed 310
Helix 27
AC9
A
403 421Right-handed alpha
Helix 28
AD1
B
12 16Right-handed 310
Helix 29
AD2
B
17 22Right-handed 310
Helix 30
AD3
B
25 38Right-handed alpha
Helix 31
AD4
B
55 63Right-handed alpha
Helix 32
AD5
B
73 84Right-handed alpha
Helix 33
AD6
B
86 90Right-handed 310
Helix 34
AD7
B
94 105Right-handed alpha
Helix 35
AD8
B
106 109Right-handed 310
Helix 36
AD9
B
110 111Right-handed 310
Helix 37
AE1
B
112 133Right-handed alpha
Helix 38
AE2
B
142 160Right-handed alpha
Helix 39
AE3
B
164 168Right-handed 310
Helix 40
AE4
B
172 188Right-handed alpha
Helix 41
AE5
B
189 191Right-handed 310
Helix 42
AE6
B
196 198Right-handed 310
Helix 43
AE7
B
199 228Right-handed alpha
Helix 44
AE8
B
233 241Right-handed alpha
Helix 45
AE9
B
251 284Right-handed alpha
Helix 46
AF1
B
284 299Right-handed alpha
Helix 47
AF2
B
305 310Right-handed alpha
Helix 48
AF3
B
312 326Right-handed alpha
Helix 49
AF4
B
358 362Right-handed alpha
Helix 50
AF5
B
364 369Right-handed alpha
Helix 51
AF6
B
376 381Right-handed 310
Helix 52
AF7
B
382 386Right-handed 310
Helix 53
AF8
B
396 400Right-handed 310
Helix 54
AF9
B
403 421Right-handed alpha
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There are 8 sheets in PDB entry 7Y9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
353 357parallel
Strand 4
A
331 336anti-parallel
Strand 5
A
68 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
422 425anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
346 348anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
440 442anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
48 53anti-parallel
Strand 3
B
353 357parallel
Strand 4
B
331 336anti-parallel
Strand 5
B
68 71anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
446 451anti-parallel
Strand 3
B
422 425anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 342first strand
Strand 2
B
346 348anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
440 442anti-parallel
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