Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y9O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y9O entry

There is 1 chain in PDB entry 7Y9O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7LEU 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7Y9O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
18 21Right-handed 310
Helix 3
AA3
A
26 37Right-handed alpha
Helix 4
AA4
A
52 62Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
89 99Right-handed alpha
Helix 7
AA7
A
100 102Right-handed 310
Helix 8
AA8
A
103 109Right-handed alpha
Helix 9
AA9
A
110 126Right-handed alpha
Helix 10
AB1
A
133 137Right-handed alpha
Helix 11
AB2
A
139 151Right-handed alpha
Helix 12
AB3
A
153 155Right-handed 310
Helix 13
AB4
A
156 168Right-handed alpha
Helix 14
AB5
A
175 205Right-handed alpha
Helix 15
AB6
A
211 222Right-handed alpha
Helix 16
AB7
A
227 229Right-handed 310
Helix 17
AB8
A
230 260Right-handed alpha
Helix 18
AB9
A
262 270Right-handed alpha
Helix 19
AC1
A
273 286Right-handed alpha
Helix 20
AC2
A
315 320Right-handed alpha
Helix 21
AC3
A
353 371Right-handed alpha
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There are 3 sheets in PDB entry 7Y9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
311 314parallel
Strand 4
A
291 295anti-parallel
Strand 5
A
66 67anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
391 400anti-parallel
Strand 3
A
372 382anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
304 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il