Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y9U entry

There are 4 chains in PDB entry 7Y9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 622
C
 SER 4SER 118
D
 SER 4SER 118
B
 MET 1LEU 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7Y9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 30Right-handed alpha
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
70 76Right-handed alpha
Helix 5
AA5
A
77 86Right-handed alpha
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
98 110Right-handed alpha
Helix 8
AA8
A
116 126Right-handed alpha
Helix 9
AA9
A
128 143Right-handed alpha
Helix 10
AB1
A
146 165Right-handed alpha
Helix 11
AB2
A
168 170Right-handed 310
Helix 12
AB3
A
457 474Right-handed alpha
Helix 13
AB4
A
476 480Right-handed 310
Helix 14
AB5
A
482 493Right-handed alpha
Helix 15
AB6
A
500 508Right-handed alpha
Helix 16
AB7
A
510 512Right-handed 310
Helix 17
AB8
A
513 529Right-handed alpha
Helix 18
AB9
A
537 542Right-handed alpha
Helix 19
AC1
A
566 577Right-handed alpha
Helix 20
AC2
A
582 591Right-handed alpha
Helix 21
AC3
A
596 608Right-handed alpha
Helix 22
AC4
A
609 622Right-handed alpha
Helix 23
AC5
B
3 30Right-handed alpha
Helix 24
AC6
B
39 49Right-handed alpha
Helix 25
AC7
B
50 60Right-handed alpha
Helix 26
AC8
B
70 76Right-handed alpha
Helix 27
AC9
B
77 86Right-handed alpha
Helix 28
AD1
B
86 91Right-handed alpha
Helix 29
AD2
B
98 110Right-handed alpha
Helix 30
AD3
B
116 126Right-handed alpha
Helix 31
AD4
B
128 143Right-handed alpha
Helix 32
AD5
B
146 165Right-handed alpha
Helix 33
AD6
B
168 170Right-handed 310
Helix 34
AD7
B
457 474Right-handed alpha
Helix 35
AD8
B
476 480Right-handed 310
Helix 36
AD9
B
482 493Right-handed alpha
Helix 37
AE1
B
500 508Right-handed alpha
Helix 38
AE2
B
510 512Right-handed 310
Helix 39
AE3
B
513 529Right-handed alpha
Helix 40
AE4
B
537 542Right-handed alpha
Helix 41
AE5
B
566 577Right-handed alpha
Helix 42
AE6
B
582 591Right-handed alpha
Helix 43
AE7
B
596 608Right-handed alpha
Helix 44
AE8
B
609 622Right-handed alpha
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There are 8 sheets in PDB entry 7Y9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
202 206parallel
Strand 3
A
192 196anti-parallel
Strand 4
C
107 109parallel
Strand 5
C
97 103anti-parallel
Strand 6
C
39 43anti-parallel
Strand 7
C
51 54anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
C
25 29anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 16first strand
Strand 2
C
115 117parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
84 88anti-parallel
Strand 3
C
72 75anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 11first strand
Strand 2
D
25 29anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 16first strand
Strand 2
D
115 117parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 23first strand
Strand 2
D
84 88anti-parallel
Strand 3
D
72 75anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
39 43anti-parallel
Strand 3
D
97 103anti-parallel
Strand 4
D
107 109anti-parallel
Strand 5
B
192 196parallel
Strand 6
B
202 206anti-parallel
Strand 7
B
172 177parallel
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