Analysis of interatomic Contacts of Structural Units in PDB entry:
7YAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YAM entry

There is 1 chain in PDB entry 7YAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17LYS 904
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7YAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed alpha
Helix 2
AA2
A
30 39Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
72 78Right-handed alpha
Helix 5
AA5
A
81 97Right-handed alpha
Helix 6
AA6
A
99 122Right-handed alpha
Helix 7
AA7
A
185 190Right-handed alpha
Helix 8
AA8
A
239 251Right-handed alpha
Helix 9
AA9
A
256 288Right-handed alpha
Helix 10
AB1
A
290 306Right-handed alpha
Helix 11
AB2
A
308 328Right-handed alpha
Helix 12
AB3
A
336 341Right-handed alpha
Helix 13
AB4
A
398 411Right-handed alpha
Helix 14
AB5
A
424 438Right-handed alpha
Helix 15
AB6
A
439 443Right-handed 310
Helix 16
AB7
A
482 489Right-handed alpha
Helix 17
AB8
A
503 520Right-handed alpha
Helix 18
AB9
A
551 562Right-handed alpha
Helix 19
AC1
A
573 585Right-handed alpha
Helix 20
AC2
A
596 602Right-handed alpha
Helix 21
AC3
A
603 611Right-handed alpha
Helix 22
AC4
A
621 635Right-handed alpha
Helix 23
AC5
A
645 647Right-handed 310
Helix 24
AC6
A
648 655Right-handed alpha
Helix 25
AC7
A
666 673Right-handed alpha
Helix 26
AC8
A
682 723Right-handed alpha
Helix 27
AC9
A
730 740Right-handed alpha
Helix 28
AD1
A
742 750Right-handed alpha
Helix 29
AD2
A
755 760Right-handed alpha
Helix 30
AD3
A
772 798Right-handed alpha
Helix 31
AD4
A
804 826Right-handed alpha
Helix 32
AD5
A
832 837Right-handed alpha
Helix 33
AD6
A
841 861Right-handed alpha
Helix 34
AD7
A
861 869Right-handed alpha
Helix 35
AD8
A
874 904Right-handed alpha
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There are 6 sheets in PDB entry 7YAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
173 179anti-parallel
Strand 5
A
216 217anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
181 184anti-parallel
Strand 3
A
222 223anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
675 677anti-parallel
Strand 3
A
657 661parallel
Strand 4
A
639 643parallel
Strand 5
A
346 349parallel
Strand 6
A
565 569parallel
Strand 7
A
616 618parallel
Strand 8
A
593 595parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
361 367anti-parallel
Strand 5
A
536 545anti-parallel
Strand 6
A
523 530anti-parallel
Strand 7
A
476 481anti-parallel
Strand 8
A
460 467anti-parallel
Strand 9
A
446 452anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
386 388anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
361 367anti-parallel
Strand 5
A
536 545anti-parallel
Strand 6
A
490 495parallel
Strand 7
A
498 501anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 417first strand
Strand 2
A
420 422anti-parallel
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