Analysis of interatomic Contacts of Structural Units in PDB entry:
7YAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YAV entry

There are 2 chains in PDB entry 7YAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 30HIS 539
A
 PHE 30LEU 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 7YAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
30 36Right-handed alpha
Helix 2
AA2
B
39 41Right-handed 310
Helix 3
AA3
B
50 58Right-handed alpha
Helix 4
AA4
B
61 67Right-handed 310
Helix 5
AA5
B
80 82Right-handed 310
Helix 6
AA6
B
83 95Right-handed alpha
Helix 7
AA7
B
109 113Right-handed 310
Helix 8
AA8
B
145 155Right-handed alpha
Helix 9
AA9
B
171 176Right-handed alpha
Helix 10
AB1
B
184 189Right-handed alpha
Helix 11
AB2
B
190 193Right-handed 310
Helix 12
AB3
B
209 221Right-handed alpha
Helix 13
AB4
B
225 229Right-handed 310
Helix 14
AB5
B
257 271Right-handed alpha
Helix 15
AB6
B
311 323Right-handed alpha
Helix 16
AB7
B
324 327Right-handed 310
Helix 17
AB8
B
329 333Right-handed 310
Helix 18
AB9
B
337 346Right-handed alpha
Helix 19
AC1
B
353 359Right-handed 310
Helix 20
AC2
B
381 391Right-handed alpha
Helix 21
AC3
B
392 395Right-handed 310
Helix 22
AC4
B
408 413Right-handed 310
Helix 23
AC5
B
442 460Right-handed alpha
Helix 24
AC6
B
461 464Right-handed 310
Helix 25
AC7
B
477 481Right-handed 310
Helix 26
AC8
B
485 489Right-handed 310
Helix 27
AC9
B
491 508Right-handed alpha
Helix 28
AD1
B
509 522Right-handed alpha
Helix 29
AD2
A
31 36Right-handed alpha
Helix 30
AD3
A
39 41Right-handed 310
Helix 31
AD4
A
50 58Right-handed alpha
Helix 32
AD5
A
61 67Right-handed 310
Helix 33
AD6
A
80 82Right-handed 310
Helix 34
AD7
A
83 95Right-handed alpha
Helix 35
AD8
A
109 113Right-handed 310
Helix 36
AD9
A
145 157Right-handed alpha
Helix 37
AE1
A
171 176Right-handed alpha
Helix 38
AE2
A
184 189Right-handed alpha
Helix 39
AE3
A
190 193Right-handed 310
Helix 40
AE4
A
210 214Right-handed alpha
Helix 41
AE5
A
214 222Right-handed alpha
Helix 42
AE6
A
225 229Right-handed 310
Helix 43
AE7
A
257 271Right-handed alpha
Helix 44
AE8
A
311 323Right-handed alpha
Helix 45
AE9
A
324 327Right-handed 310
Helix 46
AF1
A
329 333Right-handed 310
Helix 47
AF2
A
337 346Right-handed alpha
Helix 48
AF3
A
353 359Right-handed 310
Helix 49
AF4
A
381 391Right-handed alpha
Helix 50
AF5
A
392 395Right-handed 310
Helix 51
AF6
A
408 413Right-handed 310
Helix 52
AF7
A
442 460Right-handed alpha
Helix 53
AF8
A
461 464Right-handed 310
Helix 54
AF9
A
477 481Right-handed 310
Helix 55
AG1
A
491 508Right-handed alpha
Helix 56
AG2
A
509 522Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7YAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
74 76anti-parallel
Strand 3
B
118 122parallel
Strand 4
B
97 101parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
195 201anti-parallel
Strand 5
B
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
246 254anti-parallel
Strand 3
B
300 308anti-parallel
Strand 4
B
278 286anti-parallel
Strand 5
B
400 406anti-parallel
Strand 6
B
429 436anti-parallel
Strand 7
B
369 376anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
118 122parallel
Strand 4
A
97 101parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
195 201anti-parallel
Strand 5
A
207 209anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
246 254anti-parallel
Strand 3
A
296 308anti-parallel
Strand 4
A
278 290anti-parallel
Strand 5
A
400 406anti-parallel
Strand 6
A
429 436anti-parallel
Strand 7
A
369 376anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il