Analysis of interatomic Contacts of Structural Units in PDB entry:
7YBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YBD entry

There is 1 chain in PDB entry 7YBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7YBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
71 80Right-handed alpha
Helix 4
AA4
A
131 140Right-handed alpha
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
151 154Right-handed 310
Helix 7
AA7
A
196 205Right-handed alpha
Helix 8
AA8
A
241 246Right-handed 310
Helix 9
AA9
A
258 273Right-handed alpha
Helix 10
AB1
A
319 328Right-handed alpha
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There are 4 sheets in PDB entry 7YBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 63anti-parallel
Strand 5
A
2 6anti-parallel
Strand 6
A
85 90anti-parallel
Strand 7
A
96 100anti-parallel
Strand 8
A
103 107anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 63anti-parallel
Strand 5
A
228 233anti-parallel
Strand 6
A
220 225anti-parallel
Strand 7
A
211 216anti-parallel
Strand 8
A
127 130anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
165 171anti-parallel
Strand 4
A
175 182anti-parallel
Strand 5
A
355 359anti-parallel
Strand 6
A
345 349anti-parallel
Strand 7
A
333 338anti-parallel
Strand 8
A
252 257anti-parallel
Strand 9
A
307 310anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 305first strand
Strand 2
A
288 295anti-parallel
Strand 3
A
279 284anti-parallel
Strand 4
A
313 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il