Analysis of interatomic Contacts of Structural Units in PDB entry:
7YBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YBF entry

There are 3 chains in PDB entry 7YBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37HIS 216
B
 LYS 37GLY 215
C
 ASP 112TYR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7YBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 52Right-handed alpha
Helix 2
AA2
A
58 87Right-handed alpha
Helix 3
AA3
A
93 105Right-handed alpha
Helix 4
AA4
A
106 127Right-handed alpha
Helix 5
AA5
A
133 139Right-handed alpha
Helix 6
AA6
A
143 154Right-handed alpha
Helix 7
AA7
A
162 190Right-handed alpha
Helix 8
AA8
A
196 207Right-handed alpha
Helix 9
AA9
A
207 215Right-handed alpha
Helix 10
AB1
B
40 52Right-handed alpha
Helix 11
AB2
B
58 87Right-handed alpha
Helix 12
AB3
B
93 105Right-handed alpha
Helix 13
AB4
B
106 127Right-handed alpha
Helix 14
AB5
B
133 138Right-handed alpha
Helix 15
AB6
B
143 154Right-handed alpha
Helix 16
AB7
B
162 190Right-handed alpha
Helix 17
AB8
B
196 207Right-handed alpha
Helix 18
AB9
B
207 215Right-handed alpha
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There are 4 sheets in PDB entry 7YBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
194 195parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
159 160parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
194 195parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
159 160parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il