Analysis of interatomic Contacts of Structural Units in PDB entry:
7YCO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YCO entry

There are 2 chains in PDB entry 7YCO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 333LYS 528
B
 THR 8THR 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7YCO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 343Right-handed alpha
Helix 2
AA2
A
364 370Right-handed alpha
Helix 3
AA3
A
383 389Right-handed 310
Helix 4
AA4
A
405 410Right-handed 310
Helix 5
AA5
A
416 422Right-handed alpha
Helix 6
AA6
A
438 443Right-handed alpha
Helix 7
AA7
A
502 505Right-handed 310
Helix 8
AA8
B
16 28Right-handed alpha
Helix 9
AA9
B
37 42Right-handed alpha
Helix 10
AB1
B
59 63Right-handed 310
Helix 11
AB2
B
79 85Right-handed 310
Helix 12
AB3
B
104 109Right-handed 310
Helix 13
AB4
B
225 235Right-handed alpha
Helix 14
AB5
B
246 250Right-handed 310
Helix 15
AB6
B
259 263Right-handed 310
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There are 5 sheets in PDB entry 7YCO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
524 525parallel
Strand 3
A
391 392anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
68 73parallel
Strand 3
B
90 95parallel
Strand 4
B
114 118parallel
Strand 5
B
138 140parallel
Strand 6
B
162 164parallel
Strand 7
B
186 188parallel
Strand 8
B
210 212parallel
Strand 9
B
239 240parallel
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