Analysis of interatomic Contacts of Structural Units in PDB entry:
7YDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YDF entry

There is 1 chain in PDB entry 7YDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 184THR 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 7YDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 212Right-handed alpha
Helix 2
AA2
A
233 253Right-handed alpha
Helix 3
AA3
A
303 307Right-handed alpha
Helix 4
AA4
A
314 318Right-handed 310
Helix 5
AA5
A
359 382Right-handed alpha
Helix 6
AA6
A
427 434Right-handed alpha
Helix 7
AA7
A
457 469Right-handed alpha
Helix 8
AA8
A
478 486Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7YDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
386 391anti-parallel
Strand 3
A
402 410anti-parallel
Strand 4
A
415 426anti-parallel
Strand 5
A
448 456anti-parallel
Strand 6
A
347 357anti-parallel
Strand 7
A
320 329anti-parallel
Strand 8
A
256 258parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
436 438parallel
Strand 3
A
444 446anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il