Analysis of interatomic Contacts of Structural Units in PDB entry:
7YDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YDQ entry

There is 1 chain in PDB entry 7YDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 30PRO 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7YDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 58Right-handed alpha
Helix 2
AA2
A
62 83Right-handed alpha
Helix 3
AA3
A
89 111Right-handed alpha
Helix 4
AA4
A
112 145Right-handed alpha
Helix 5
AA5
A
149 173Right-handed alpha
Helix 6
AA6
A
185 206Right-handed alpha
Helix 7
AA7
A
232 239Right-handed alpha
Helix 8
AA8
A
242 249Right-handed alpha
Helix 9
AA9
A
249 257Right-handed alpha
Helix 10
AB1
A
262 270Right-handed alpha
Helix 11
AB2
A
272 290Right-handed alpha
Helix 12
AB3
A
309 316Right-handed alpha
Helix 13
AB4
A
317 320Right-handed 310
Helix 14
AB5
A
321 332Right-handed alpha
Helix 15
AB6
A
334 338Right-handed 310
Helix 16
AB7
A
339 355Right-handed alpha
Helix 17
AB8
A
360 365Right-handed alpha
Helix 18
AB9
A
374 379Right-handed 310
Helix 19
AC1
A
426 435Right-handed alpha
Helix 20
AC2
A
448 452Right-handed 310
Helix 21
AC3
A
453 461Right-handed alpha
Helix 22
AC4
A
613 635Right-handed alpha
Helix 23
AC5
A
636 644Right-handed 310
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There is 1 sheet (AA1) in PDB entry 7YDQ.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
395 406anti-parallel
Strand 3
A
411 418anti-parallel
Strand 4
A
587 597anti-parallel
Strand 5
A
569 578anti-parallel
Strand 6
A
517 525anti-parallel
Strand 7
A
530 540anti-parallel
Strand 8
A
546 557anti-parallel
Strand 9
A
462 470anti-parallel
Strand 10
A
475 485anti-parallel
Strand 11
A
488 498anti-parallel
Strand 12
A
382 392parallel
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