Analysis of interatomic Contacts of Structural Units in PDB entry:
7YDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YDW entry

There are 6 chains in PDB entry 7YDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 63HIS 156
B
 ARG 62GLN 157
E
 A 1 A 10
F
 T 1 T 10
C
 ARG 63HIS 156
D
 ARG 62GLN 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7YDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 73Right-handed alpha
Helix 2
AA2
A
113 126Right-handed alpha
Helix 3
AA3
A
145 156Right-handed alpha
Helix 4
AA4
B
66 73Right-handed alpha
Helix 5
AA5
B
113 126Right-handed alpha
Helix 6
AA6
B
145 156Right-handed alpha
Helix 7
AA7
C
66 73Right-handed alpha
Helix 8
AA8
C
113 126Right-handed alpha
Helix 9
AA9
C
145 156Right-handed alpha
Helix 10
AB1
D
66 73Right-handed alpha
Helix 11
AB2
D
113 126Right-handed alpha
Helix 12
AB3
D
145 156Right-handed alpha
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There are 4 sheets in PDB entry 7YDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
102 104anti-parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
139 140anti-parallel
Strand 6
A
143 144anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
102 104anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
79 87anti-parallel
Strand 5
B
138 140anti-parallel
Strand 6
B
143 144anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
102 104anti-parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
79 87anti-parallel
Strand 5
C
139 140anti-parallel
Strand 6
C
143 144anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 111first strand
Strand 2
D
102 104anti-parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
79 87anti-parallel
Strand 5
D
138 140anti-parallel
Strand 6
D
143 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il