Analysis of interatomic Contacts of Structural Units in PDB entry:
7YE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YE1 entry

There are 11 chains in PDB entry 7YE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	LEU 330
B	GLU 3	GLU 234
C	GLN 3	ASN 1355
D	THR 17	GLU 1380
E	ARG 3	LEU 71
F	ASP 110	ASP 652
G	MET 1	GLY 161
H	A -45	G -22
H	A -20	C 11
I	G -11	G 18
I	T 20	T 45

There are131 helices in PDB entry 7YE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	51	Right-handed alpha
Helix 2	AA2	A	80	89	Right-handed alpha
Helix 3	AA3	A	212	229	Right-handed alpha
Helix 4	AA4	A	251	256	Right-handed 310
Helix 5	AA5	A	257	261	Right-handed 310
Helix 6	AA6	A	264	275	Right-handed alpha
Helix 7	AA7	A	278	285	Right-handed alpha
Helix 8	AA8	A	287	292	Right-handed alpha
Helix 9	AA9	A	299	311	Right-handed alpha
Helix 10	AB1	A	325	329	Right-handed 310
Helix 11	AB2	B	37	51	Right-handed alpha
Helix 12	AB3	B	80	90	Right-handed alpha
Helix 13	AB4	B	211	227	Right-handed alpha
Helix 14	AB5	C	28	39	Right-handed alpha
Helix 15	AB6	C	52	60	Right-handed alpha
Helix 16	AB7	C	85	93	Right-handed alpha
Helix 17	AB8	C	111	115	Right-handed 310
Helix 18	AB9	C	212	219	Right-handed alpha
Helix 19	AC1	C	224	229	Right-handed alpha
Helix 20	AC2	C	276	285	Right-handed alpha
Helix 21	AC3	C	329	335	Right-handed alpha
Helix 22	AC4	C	353	359	Right-handed alpha
Helix 23	AC5	C	366	379	Right-handed alpha
Helix 24	AC6	C	385	398	Right-handed alpha
Helix 25	AC7	C	406	417	Right-handed alpha
Helix 26	AC8	C	429	446	Right-handed alpha
Helix 27	AC9	C	455	457	Right-handed 310
Helix 28	AD1	C	463	487	Right-handed alpha
Helix 29	AD2	C	506	516	Right-handed alpha
Helix 30	AD3	C	527	534	Right-handed alpha
Helix 31	AD4	C	547	551	Right-handed 310
Helix 32	AD5	C	617	622	Right-handed 310
Helix 33	AD6	C	669	674	Right-handed alpha
Helix 34	AD7	C	682	694	Right-handed alpha
Helix 35	AD8	C	710	719	Right-handed alpha
Helix 36	AD9	C	826	831	Right-handed alpha
Helix 37	AE1	C	865	869	Right-handed 310
Helix 38	AE2	C	902	913	Right-handed alpha
Helix 39	AE3	C	951	986	Right-handed alpha
Helix 40	AE4	C	1012	1016	Right-handed 310
Helix 41	AE5	C	1023	1057	Right-handed alpha
Helix 42	AE6	C	1106	1110	Right-handed 310
Helix 43	AE7	C	1119	1124	Right-handed alpha
Helix 44	AE8	C	1127	1153	Right-handed alpha
Helix 45	AE9	C	1156	1167	Right-handed alpha
Helix 46	AF1	C	1182	1191	Right-handed alpha
Helix 47	AF2	C	1205	1217	Right-handed alpha
Helix 48	AF3	C	1285	1295	Right-handed alpha
Helix 49	AF4	C	1298	1307	Right-handed alpha
Helix 50	AF5	C	1314	1325	Right-handed alpha
Helix 51	AF6	C	1334	1347	Right-handed alpha
Helix 52	AF7	D	27	35	Right-handed alpha
Helix 53	AF8	D	59	64	Right-handed alpha
Helix 54	AF9	D	71	75	Right-handed 310
Helix 55	AG1	D	95	101	Right-handed 310
Helix 56	AG2	D	115	120	Right-handed alpha
Helix 57	AG3	D	123	128	Right-handed alpha
Helix 58	AG4	D	129	131	Right-handed 310
Helix 59	AG5	D	132	141	Right-handed alpha
Helix 60	AG6	D	163	169	Right-handed alpha
Helix 61	AG7	D	183	194	Right-handed alpha
Helix 62	AG8	D	196	208	Right-handed alpha
Helix 63	AG9	D	214	233	Right-handed alpha
Helix 64	AH1	D	235	239	Right-handed 310
Helix 65	AH2	D	266	288	Right-handed alpha
Helix 66	AH3	D	290	310	Right-handed alpha
Helix 67	AH4	D	328	333	Right-handed alpha
Helix 68	AH5	D	372	379	Right-handed alpha
Helix 69	AH6	D	379	391	Right-handed alpha
Helix 70	AH7	D	395	406	Right-handed alpha
Helix 71	AH8	D	409	418	Right-handed alpha
Helix 72	AH9	D	432	434	Right-handed 310
Helix 73	AI1	D	455	460	Right-handed alpha
Helix 74	AI2	D	475	486	Right-handed alpha
Helix 75	AI3	D	506	517	Right-handed alpha
Helix 76	AI4	D	531	542	Right-handed alpha
Helix 77	AI5	D	577	581	Right-handed 310
Helix 78	AI6	D	588	594	Right-handed 310
Helix 79	AI7	D	597	612	Right-handed alpha
Helix 80	AI8	D	613	633	Right-handed alpha
Helix 81	AI9	D	649	668	Right-handed alpha
Helix 82	AJ1	D	674	703	Right-handed alpha
Helix 83	AJ2	D	716	725	Right-handed alpha
Helix 84	AJ3	D	729	738	Right-handed alpha
Helix 85	AJ4	D	764	800	Right-handed alpha
Helix 86	AJ5	D	830	836	Right-handed alpha
Helix 87	AJ6	D	861	871	Right-handed alpha
Helix 88	AJ7	D	892	896	Right-handed alpha
Helix 89	AJ8	D	910	921	Right-handed alpha
Helix 90	AJ9	D	1128	1138	Right-handed alpha
Helix 91	AK1	D	1212	1220	Right-handed alpha
Helix 92	AK2	D	1221	1239	Right-handed alpha
Helix 93	AK3	D	1245	1257	Right-handed alpha
Helix 94	AK4	D	1276	1290	Right-handed alpha
Helix 95	AK5	D	1304	1309	Right-handed alpha
Helix 96	AK6	D	1314	1322	Right-handed alpha
Helix 97	AK7	D	1323	1335	Right-handed alpha
Helix 98	AK8	D	1342	1350	Right-handed alpha
Helix 99	AK9	D	1356	1380	Right-handed alpha
Helix 100	AL1	E	6	13	Right-handed alpha
Helix 101	AL2	E	17	31	Right-handed alpha
Helix 102	AL3	E	44	54	Right-handed alpha
Helix 103	AL4	E	60	68	Right-handed alpha
Helix 104	AL5	F	114	127	Right-handed alpha
Helix 105	AL6	F	132	153	Right-handed alpha
Helix 106	AL7	F	158	167	Right-handed alpha
Helix 107	AL8	F	181	189	Right-handed alpha
Helix 108	AL9	F	241	260	Right-handed alpha
Helix 109	AM1	F	263	275	Right-handed alpha
Helix 110	AM2	F	279	299	Right-handed alpha
Helix 111	AM3	F	303	333	Right-handed alpha
Helix 112	AM4	F	338	349	Right-handed alpha
Helix 113	AM5	F	354	363	Right-handed alpha
Helix 114	AM6	F	364	368	Right-handed 310
Helix 115	AM7	F	369	392	Right-handed alpha
Helix 116	AM8	F	397	423	Right-handed alpha
Helix 117	AM9	F	425	434	Right-handed alpha
Helix 118	AN1	F	440	456	Right-handed alpha
Helix 119	AN2	F	466	487	Right-handed alpha
Helix 120	AN3	F	493	514	Right-handed alpha
Helix 121	AN4	F	519	528	Right-handed alpha
Helix 122	AN5	F	530	538	Right-handed alpha
Helix 123	AN6	F	570	588	Right-handed alpha
Helix 124	AN7	F	592	603	Right-handed alpha
Helix 125	AN8	F	612	620	Right-handed alpha
Helix 126	AN9	F	624	639	Right-handed alpha
Helix 127	AO1	F	647	652	Right-handed alpha
Helix 128	AO2	G	4	18	Right-handed alpha
Helix 129	AO3	G	20	29	Right-handed alpha
Helix 130	AO4	G	32	44	Right-handed alpha
Helix 131	AO5	G	143	151	Right-handed alpha

There are 36 sheets in PDB entry 7YE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	26	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	179	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	26	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	185	188	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	148	149	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	61	64	anti-parallel
Strand 4	A	170	171	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	125	126	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	203	205	anti-parallel
Strand 3	B	182	183	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	144	146	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1196	1197	parallel
Strand 3	C	707	708	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	79	first strand
Strand 2	C	97	105	anti-parallel
Strand 3	C	126	134	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	462	first strand
Strand 2	C	153	157	anti-parallel
Strand 3	C	538	539	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	179	181	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	201	204	anti-parallel
Strand 3	C	210	211	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	291	292	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	595	602	anti-parallel
Strand 3	C	607	615	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	595	602	anti-parallel
Strand 3	C	659	661	anti-parallel
Strand 4	C	624	625	parallel
Strand 5	C	642	644	anti-parallel
Strand 6	C	649	651	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	731	734	first strand
Strand 2	C	739	741	anti-parallel
Strand 3	C	755	757	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	763	764	first strand
Strand 2	C	770	771	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	774	775	first strand
Strand 2	C	790	791	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	795	796	first strand
Strand 2	C	799	800	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	809	first strand
Strand 2	C	1241	1245	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1093	1094	first strand
Strand 2	C	821	824	parallel
Strand 3	C	1114	1116	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	836	839	first strand
Strand 2	C	1066	1076	anti-parallel
Strand 3	C	842	845	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	836	839	first strand
Strand 2	C	1066	1076	anti-parallel
Strand 3	C	933	941	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	888	890	first strand
Strand 2	C	924	925	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	893	895	first strand
Strand 2	C	919	921	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1258	1260	first strand
Strand 2	D	352	356	anti-parallel
Strand 3	D	467	471	anti-parallel
Strand 4	D	423	426	anti-parallel
Strand 5	D	436	444	anti-parallel
Strand 6	D	367	371	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1283	1284	first strand
Strand 2	D	347	348	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1349	1354	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	1337	1338	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	243	246	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	179	181	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	551	553	parallel
Strand 3	D	567	569	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	805	807	first strand
Strand 2	D	890	891	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	816	818	first strand
Strand 2	D	876	878	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	822	823	first strand
Strand 2	D	826	827	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1274	1275	first strand
Strand 2	D	1259	1260	anti-parallel
Strand 3	D	1300	1301	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	122	first strand
Strand 2	G	131	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YE1