Analysis of interatomic Contacts of Structural Units in PDB entry:
7YE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YE4 entry

There are 6 chains in PDB entry 7YE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	GLU 26	ARG 392
C	GLY 37	ALA 90
D	PRO 31	SER 243
E	SER 21	SER 111
P	GLU 1002	PHE 1300

There are 28 helices in PDB entry 7YE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed alpha
Helix 2	AA2	A	107	117	Right-handed alpha
Helix 3	AA3	A	137	145	Right-handed alpha
Helix 4	AA4	A	189	195	Right-handed alpha
Helix 5	AA5	A	215	230	Right-handed alpha
Helix 6	AA6	A	297	313	Right-handed alpha
Helix 7	AA7	A	361	368	Right-handed alpha
Helix 8	AA8	A	378	391	Right-handed alpha
Helix 9	AA9	A	542	552	Right-handed alpha
Helix 10	AB1	A	647	651	Right-handed 310
Helix 11	AB2	B	319	323	Right-handed 310
Helix 12	AB3	D	32	37	Right-handed alpha
Helix 13	AB4	D	49	54	Right-handed alpha
Helix 14	AB5	D	55	59	Right-handed 310
Helix 15	AB6	D	71	79	Right-handed alpha
Helix 16	AB7	D	84	99	Right-handed alpha
Helix 17	AB8	D	105	118	Right-handed alpha
Helix 18	AB9	D	123	129	Right-handed alpha
Helix 19	AC1	D	137	143	Right-handed alpha
Helix 20	AC2	D	144	154	Right-handed alpha
Helix 21	AC3	D	159	189	Right-handed alpha
Helix 22	AC4	D	193	205	Right-handed alpha
Helix 23	AC5	D	208	225	Right-handed alpha
Helix 24	AC6	D	227	239	Right-handed alpha
Helix 25	AC7	E	51	59	Right-handed alpha
Helix 26	AC8	P	1003	1012	Right-handed alpha
Helix 27	AC9	P	1013	1022	Right-handed alpha
Helix 28	AD1	P	1135	1139	Right-handed 310

There are 23 sheets in PDB entry 7YE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	163	168	parallel
Strand 3	A	152	155	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	183	first strand
Strand 2	A	254	261	parallel
Strand 3	A	239	240	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	267	276	anti-parallel
Strand 3	A	334	342	parallel
Strand 4	A	325	329	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	417	parallel
Strand 3	A	400	402	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	P	1297	1298	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	446	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	470	475	anti-parallel
Strand 4	A	485	487	anti-parallel
Strand 5	A	513	518	anti-parallel
Strand 6	A	523	527	anti-parallel
Strand 7	A	565	579	anti-parallel
Strand 8	A	529	537	anti-parallel
Strand 9	A	505	506	anti-parallel
Strand 10	A	494	495	anti-parallel

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There are 15 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	446	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	470	475	anti-parallel
Strand 4	A	485	487	anti-parallel
Strand 5	A	513	518	anti-parallel
Strand 6	A	523	527	anti-parallel
Strand 7	A	565	579	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	608	620	anti-parallel
Strand 10	A	628	640	anti-parallel
Strand 11	A	711	719	anti-parallel
Strand 12	A	733	740	anti-parallel
Strand 13	A	768	776	anti-parallel
Strand 14	A	784	792	anti-parallel
Strand 15	A	802	805	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	509	510	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	95	96	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	145	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	184	186	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	216	220	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	270	271	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	296	298	anti-parallel
Strand 3	B	306	308	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	349	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	374	first strand
Strand 2	B	377	381	anti-parallel
Strand 3	B	387	388	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	66	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	104	107	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1044	1047	first strand
Strand 2	P	1061	1064	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1057	1058	first strand
Strand 2	P	1091	1092	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1081	1089	first strand
Strand 2	P	1097	1110	anti-parallel
Strand 3	P	1120	1133	anti-parallel
Strand 4	P	1141	1143	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1081	1089	first strand
Strand 2	P	1097	1110	anti-parallel
Strand 3	P	1120	1133	anti-parallel
Strand 4	P	1146	1156	anti-parallel
Strand 5	P	1170	1173	anti-parallel
Strand 6	P	1203	1207	anti-parallel
Strand 7	P	1227	1232	anti-parallel
Strand 8	P	1257	1261	anti-parallel
Strand 9	P	1279	1280	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1165	1167	first strand
Strand 2	P	1210	1214	anti-parallel
Strand 3	P	1220	1224	anti-parallel
Strand 4	P	1266	1267	anti-parallel
Strand 5	P	1272	1273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YE4