Analysis of interatomic Contacts of Structural Units in PDB entry:
7YE6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YE6 entry

There are 6 chains in PDB entry 7YE6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	ASP 28	ARG 392
C	TYR 31	PRO 84
D	PRO 31	SER 243
E	VAL 26	SER 111
P	ARG 1005	PHE 1300

There are 29 helices in PDB entry 7YE6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	71	Right-handed alpha
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	129	135	Right-handed alpha
Helix 4	AA4	A	191	197	Right-handed alpha
Helix 5	AA5	A	218	223	Right-handed alpha
Helix 6	AA6	A	223	231	Right-handed alpha
Helix 7	AA7	A	232	234	Right-handed 310
Helix 8	AA8	A	284	289	Right-handed alpha
Helix 9	AA9	A	297	303	Right-handed alpha
Helix 10	AB1	A	378	381	Right-handed 310
Helix 11	AB2	A	382	391	Right-handed alpha
Helix 12	AB3	A	542	551	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	B	319	323	Right-handed 310
Helix 15	AB6	D	32	37	Right-handed alpha
Helix 16	AB7	D	68	73	Right-handed alpha
Helix 17	AB8	D	74	79	Right-handed alpha
Helix 18	AB9	D	87	92	Right-handed 310
Helix 19	AC1	D	93	98	Right-handed alpha
Helix 20	AC2	D	104	109	Right-handed alpha
Helix 21	AC3	D	137	154	Right-handed alpha
Helix 22	AC4	D	160	174	Right-handed alpha
Helix 23	AC5	D	175	189	Right-handed alpha
Helix 24	AC6	D	190	199	Right-handed alpha
Helix 25	AC7	D	209	215	Right-handed alpha
Helix 26	AC8	D	215	225	Right-handed alpha
Helix 27	AC9	E	51	59	Right-handed alpha
Helix 28	AD1	P	1012	1020	Right-handed alpha
Helix 29	AD2	P	1024	1029	Right-handed alpha

There are 18 sheets in PDB entry 7YE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	334	339	parallel
Strand 3	A	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	413	416	parallel
Strand 3	A	400	403	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	469	475	anti-parallel
Strand 3	A	484	491	anti-parallel
Strand 4	A	505	517	anti-parallel
Strand 5	A	525	537	anti-parallel
Strand 6	A	572	581	anti-parallel
Strand 7	A	590	599	anti-parallel
Strand 8	A	608	620	anti-parallel
Strand 9	A	637	640	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	569	first strand
Strand 2	A	525	537	anti-parallel
Strand 3	A	572	581	anti-parallel
Strand 4	A	590	599	anti-parallel
Strand 5	A	608	620	anti-parallel
Strand 6	A	628	634	anti-parallel
Strand 7	A	710	718	anti-parallel
Strand 8	A	735	745	anti-parallel
Strand 9	A	767	774	anti-parallel
Strand 10	A	785	790	anti-parallel
Strand 11	A	802	803	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	778	first strand
Strand 2	A	781	782	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	386	390	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	72	75	anti-parallel
Strand 3	B	80	84	anti-parallel
Strand 4	B	95	96	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	259	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	305	308	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	337	339	anti-parallel
Strand 3	B	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	77	80	anti-parallel
Strand 3	E	87	91	anti-parallel
Strand 4	E	106	107	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	66	first strand
Strand 2	E	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1042	1043	first strand
Strand 2	P	1058	1071	anti-parallel
Strand 3	P	1078	1089	anti-parallel
Strand 4	P	1101	1109	anti-parallel
Strand 5	P	1118	1129	anti-parallel
Strand 6	P	1147	1156	anti-parallel
Strand 7	P	1167	1175	anti-parallel
Strand 8	P	1202	1210	anti-parallel
Strand 9	P	1227	1231	anti-parallel
Strand 10	P	1256	1260	anti-parallel
Strand 11	P	1280	1281	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1042	1043	first strand
Strand 2	P	1058	1071	anti-parallel
Strand 3	P	1046	1052	anti-parallel
Strand 4	P	1286	1290	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1213	1215	first strand
Strand 2	P	1220	1224	anti-parallel
Strand 3	P	1263	1267	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YE6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YE6