Analysis of interatomic Contacts of Structural Units in PDB entry:
7YEP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YEP entry

There are 4 chains in PDB entry 7YEP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 67	LEU 714
B	PRO 67	LEU 714
C	PRO 67	LEU 714
D	PRO 67	LEU 714

There are116 helices in PDB entry 7YEP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	82	Right-handed alpha
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	89	98	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	114	122	Right-handed alpha
Helix 6	AA6	A	130	141	Right-handed alpha
Helix 7	AA7	A	154	158	Right-handed 310
Helix 8	AA8	A	161	169	Right-handed alpha
Helix 9	AA9	A	172	182	Right-handed alpha
Helix 10	AB1	A	207	215	Right-handed alpha
Helix 11	AB2	A	217	227	Right-handed alpha
Helix 12	AB3	A	243	251	Right-handed alpha
Helix 13	AB4	A	255	277	Right-handed alpha
Helix 14	AB5	A	292	300	Right-handed alpha
Helix 15	AB6	A	303	311	Right-handed alpha
Helix 16	AB7	A	350	357	Right-handed alpha
Helix 17	AB8	A	363	367	Right-handed 310
Helix 18	AB9	A	370	408	Right-handed alpha
Helix 19	AC1	A	424	453	Right-handed alpha
Helix 20	AC2	A	461	466	Right-handed alpha
Helix 21	AC3	A	467	487	Right-handed alpha
Helix 22	AC4	A	491	511	Right-handed alpha
Helix 23	AC5	A	514	532	Right-handed alpha
Helix 24	AC6	A	532	553	Right-handed alpha
Helix 25	AC7	A	587	600	Right-handed alpha
Helix 26	AC8	A	613	629	Right-handed alpha
Helix 27	AC9	A	631	647	Right-handed alpha
Helix 28	AD1	A	648	668	Right-handed alpha
Helix 29	AD2	A	709	713	Right-handed 310
Helix 30	AD3	B	71	82	Right-handed alpha
Helix 31	AD4	B	84	88	Right-handed 310
Helix 32	AD5	B	89	98	Right-handed alpha
Helix 33	AD6	B	103	107	Right-handed 310
Helix 34	AD7	B	114	122	Right-handed alpha
Helix 35	AD8	B	130	141	Right-handed alpha
Helix 36	AD9	B	154	158	Right-handed 310
Helix 37	AE1	B	161	169	Right-handed alpha
Helix 38	AE2	B	172	182	Right-handed alpha
Helix 39	AE3	B	207	215	Right-handed alpha
Helix 40	AE4	B	217	227	Right-handed alpha
Helix 41	AE5	B	243	251	Right-handed alpha
Helix 42	AE6	B	255	277	Right-handed alpha
Helix 43	AE7	B	292	300	Right-handed alpha
Helix 44	AE8	B	303	311	Right-handed alpha
Helix 45	AE9	B	350	357	Right-handed alpha
Helix 46	AF1	B	363	367	Right-handed 310
Helix 47	AF2	B	370	408	Right-handed alpha
Helix 48	AF3	B	424	454	Right-handed alpha
Helix 49	AF4	B	461	466	Right-handed alpha
Helix 50	AF5	B	467	487	Right-handed alpha
Helix 51	AF6	B	491	511	Right-handed alpha
Helix 52	AF7	B	514	532	Right-handed alpha
Helix 53	AF8	B	532	553	Right-handed alpha
Helix 54	AF9	B	587	600	Right-handed alpha
Helix 55	AG1	B	613	629	Right-handed alpha
Helix 56	AG2	B	631	647	Right-handed alpha
Helix 57	AG3	B	648	668	Right-handed alpha
Helix 58	AG4	B	709	713	Right-handed 310
Helix 59	AG5	C	71	82	Right-handed alpha
Helix 60	AG6	C	84	88	Right-handed 310
Helix 61	AG7	C	89	98	Right-handed alpha
Helix 62	AG8	C	103	107	Right-handed 310
Helix 63	AG9	C	114	122	Right-handed alpha
Helix 64	AH1	C	130	141	Right-handed alpha
Helix 65	AH2	C	154	158	Right-handed 310
Helix 66	AH3	C	161	169	Right-handed alpha
Helix 67	AH4	C	172	182	Right-handed alpha
Helix 68	AH5	C	207	215	Right-handed alpha
Helix 69	AH6	C	217	226	Right-handed alpha
Helix 70	AH7	C	243	251	Right-handed alpha
Helix 71	AH8	C	255	277	Right-handed alpha
Helix 72	AH9	C	292	300	Right-handed alpha
Helix 73	AI1	C	303	311	Right-handed alpha
Helix 74	AI2	C	350	357	Right-handed alpha
Helix 75	AI3	C	363	367	Right-handed 310
Helix 76	AI4	C	370	408	Right-handed alpha
Helix 77	AI5	C	424	453	Right-handed alpha
Helix 78	AI6	C	461	466	Right-handed alpha
Helix 79	AI7	C	467	487	Right-handed alpha
Helix 80	AI8	C	491	511	Right-handed alpha
Helix 81	AI9	C	514	532	Right-handed alpha
Helix 82	AJ1	C	532	553	Right-handed alpha
Helix 83	AJ2	C	587	600	Right-handed alpha
Helix 84	AJ3	C	613	629	Right-handed alpha
Helix 85	AJ4	C	631	647	Right-handed alpha
Helix 86	AJ5	C	648	668	Right-handed alpha
Helix 87	AJ6	C	709	713	Right-handed 310
Helix 88	AJ7	D	71	82	Right-handed alpha
Helix 89	AJ8	D	84	88	Right-handed 310
Helix 90	AJ9	D	89	98	Right-handed alpha
Helix 91	AK1	D	103	107	Right-handed 310
Helix 92	AK2	D	114	122	Right-handed alpha
Helix 93	AK3	D	130	141	Right-handed alpha
Helix 94	AK4	D	154	158	Right-handed 310
Helix 95	AK5	D	161	169	Right-handed alpha
Helix 96	AK6	D	172	182	Right-handed alpha
Helix 97	AK7	D	207	215	Right-handed alpha
Helix 98	AK8	D	217	227	Right-handed alpha
Helix 99	AK9	D	243	251	Right-handed alpha
Helix 100	AL1	D	255	277	Right-handed alpha
Helix 101	AL2	D	292	300	Right-handed alpha
Helix 102	AL3	D	303	311	Right-handed alpha
Helix 103	AL4	D	350	357	Right-handed alpha
Helix 104	AL5	D	363	367	Right-handed 310
Helix 105	AL6	D	370	408	Right-handed alpha
Helix 106	AL7	D	424	453	Right-handed alpha
Helix 107	AL8	D	461	466	Right-handed alpha
Helix 108	AL9	D	467	487	Right-handed alpha
Helix 109	AM1	D	491	511	Right-handed alpha
Helix 110	AM2	D	514	532	Right-handed alpha
Helix 111	AM3	D	532	553	Right-handed alpha
Helix 112	AM4	D	587	600	Right-handed alpha
Helix 113	AM5	D	613	629	Right-handed alpha
Helix 114	AM6	D	631	647	Right-handed alpha
Helix 115	AM7	D	648	668	Right-handed alpha
Helix 116	AM8	D	709	713	Right-handed 310

There are 4 sheets in PDB entry 7YEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	333	339	anti-parallel
Strand 3	A	697	705	anti-parallel
Strand 4	A	682	684	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	339	first strand
Strand 2	B	697	705	anti-parallel
Strand 3	B	682	684	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	333	339	anti-parallel
Strand 3	C	697	705	anti-parallel
Strand 4	C	682	684	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	326	first strand
Strand 2	D	333	339	anti-parallel
Strand 3	D	697	705	anti-parallel
Strand 4	D	682	684	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YEP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YEP