Analysis of interatomic Contacts of Structural Units in PDB entry:
7YER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YER entry

There are 5 chains in PDB entry 7YER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8ASN 1383
B
 HIS 81ILE 340
C
 HIS 81SER 179
D
 SER 82THR 149
E
 ASN 80VAL 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 7YER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
38 43Right-handed 310
Helix 3
AA3
A
51 55Right-handed 310
Helix 4
AA4
A
56 63Right-handed alpha
Helix 5
AA5
A
72 75Right-handed 310
Helix 6
AA6
A
76 84Right-handed alpha
Helix 7
AA7
A
95 99Right-handed 310
Helix 8
AA8
A
100 112Right-handed alpha
Helix 9
AA9
A
113 122Right-handed alpha
Helix 10
AB1
A
132 142Right-handed alpha
Helix 11
AB2
A
145 166Right-handed alpha
Helix 12
AB3
A
168 170Right-handed 310
Helix 13
AB4
A
196 198Right-handed 310
Helix 14
AB5
A
208 212Right-handed 310
Helix 15
AB6
A
216 221Right-handed alpha
Helix 16
AB7
A
235 261Right-handed alpha
Helix 17
AB8
A
271 288Right-handed alpha
Helix 18
AB9
A
291 296Right-handed alpha
Helix 19
AC1
A
297 308Right-handed alpha
Helix 20
AC2
A
317 334Right-handed alpha
Helix 21
AC3
A
343 348Right-handed alpha
Helix 22
AC4
A
350 357Right-handed alpha
Helix 23
AC5
A
361 369Right-handed alpha
Helix 24
AC6
A
381 391Right-handed alpha
Helix 25
AC7
A
400 422Right-handed alpha
Helix 26
AC8
A
439 445Right-handed alpha
Helix 27
AC9
A
450 454Right-handed 310
Helix 28
AD1
A
458 464Right-handed 310
Helix 29
AD2
A
477 481Right-handed 310
Helix 30
AD3
A
490 498Right-handed 310
Helix 31
AD4
A
515 522Right-handed alpha
Helix 32
AD5
A
527 537Right-handed alpha
Helix 33
AD6
A
538 542Right-handed 310
Helix 34
AD7
A
567 584Right-handed alpha
Helix 35
AD8
A
596 600Right-handed 310
Helix 36
AD9
A
604 609Right-handed alpha
Helix 37
AE1
A
634 640Right-handed 310
Helix 38
AE2
A
641 656Right-handed alpha
Helix 39
AE3
A
664 669Right-handed alpha
Helix 40
AE4
A
670 672Right-handed 310
Helix 41
AE5
A
688 692Right-handed 310
Helix 42
AE6
A
712 731Right-handed alpha
Helix 43
AE7
A
759 783Right-handed alpha
Helix 44
AE8
A
815 820Right-handed alpha
Helix 45
AE9
A
832 850Right-handed alpha
Helix 46
AF1
A
854 875Right-handed alpha
Helix 47
AF2
A
884 891Right-handed alpha
Helix 48
AF3
A
895 903Right-handed alpha
Helix 49
AF4
A
906 910Right-handed 310
Helix 50
AF5
A
916 921Right-handed 310
Helix 51
AF6
A
927 943Right-handed alpha
Helix 52
AF7
A
949 954Right-handed alpha
Helix 53
AF8
A
963 968Right-handed alpha
Helix 54
AF9
A
974 978Right-handed 310
Helix 55
AG1
A
980 995Right-handed alpha
Helix 56
AG2
A
1000 1005Right-handed alpha
Helix 57
AG3
A
1008 1021Right-handed alpha
Helix 58
AG4
A
1027 1036Right-handed alpha
Helix 59
AG5
A
1038 1048Right-handed alpha
Helix 60
AG6
A
1054 1059Right-handed alpha
Helix 61
AG7
A
1061 1065Right-handed 310
Helix 62
AG8
A
1069 1085Right-handed alpha
Helix 63
AG9
A
1094 1100Right-handed alpha
Helix 64
AH1
A
1105 1117Right-handed alpha
Helix 65
AH2
A
1134 1139Right-handed alpha
Helix 66
AH3
A
1150 1155Right-handed alpha
Helix 67
AH4
A
1182 1186Right-handed 310
Helix 68
AH5
A
1213 1230Right-handed alpha
Helix 69
AH6
A
1234 1238Right-handed 310
Helix 70
AH7
A
1239 1245Right-handed alpha
Helix 71
AH8
A
1254 1259Right-handed alpha
Helix 72
AH9
A
1287 1290Right-handed 310
Helix 73
AI1
A
1296 1300Right-handed 310
Helix 74
AI2
A
1315 1331Right-handed alpha
Helix 75
AI3
A
1335 1339Right-handed 310
Helix 76
AI4
B
82 117Right-handed alpha
Helix 77
AI5
B
118 123Right-handed alpha
Helix 78
AI6
B
124 126Right-handed 310
Helix 79
AI7
B
127 149Right-handed alpha
Helix 80
AI8
B
155 163Right-handed alpha
Helix 81
AI9
B
177 187Right-handed alpha
Helix 82
AJ1
B
193 205Right-handed alpha
Helix 83
AJ2
B
220 230Right-handed alpha
Helix 84
AJ3
B
237 254Right-handed alpha
Helix 85
AJ4
B
255 269Right-handed alpha
Helix 86
AJ5
B
272 284Right-handed alpha
Helix 87
AJ6
B
285 288Right-handed 310
Helix 88
AJ7
B
305 309Right-handed 310
Helix 89
AJ8
C
82 118Right-handed alpha
Helix 90
AJ9
C
120 144Right-handed alpha
Helix 91
AK1
C
152 165Right-handed alpha
Helix 92
AK2
D
83 112Right-handed alpha
Helix 93
AK3
D
113 146Right-handed alpha
Helix 94
AK4
E
81 144Right-handed alpha
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There are 7 sheets in PDB entry 7YER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
227 233anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
C
146 148anti-parallel
Strand 3
B
174 176anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
562 565anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 740first strand
Strand 2
A
743 749anti-parallel
Strand 3
A
626 632anti-parallel
Strand 4
A
793 795anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 801first strand
Strand 2
A
804 807anti-parallel
Strand 3
A
810 811anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1292 1295first strand
Strand 2
A
1164 1169anti-parallel
Strand 3
A
1343 1347anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 297first strand
Strand 2
B
324 330parallel
Strand 3
B
335 339anti-parallel
Strand 4
B
311 313anti-parallel
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