Analysis of interatomic Contacts of Structural Units in PDB entry:
7YF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YF5 entry

There are 2 chains in PDB entry 7YF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 284ARG 446
A
 GLY 276HIS 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7YF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
288 297Right-handed alpha
Helix 2
AA2
B
316 328Right-handed alpha
Helix 3
AA3
B
357 363Right-handed alpha
Helix 4
AA4
B
375 386Right-handed alpha
Helix 5
AA5
B
397 408Right-handed alpha
Helix 6
AA6
B
420 434Right-handed alpha
Helix 7
AA7
B
435 446Right-handed alpha
Helix 8
AA8
A
288 297Right-handed alpha
Helix 9
AA9
A
316 328Right-handed alpha
Helix 10
AB1
A
357 363Right-handed alpha
Helix 11
AB2
A
375 386Right-handed alpha
Helix 12
AB3
A
397 408Right-handed alpha
Helix 13
AB4
A
420 434Right-handed alpha
Helix 14
AB5
A
434 449Right-handed alpha
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There are 2 sheets in PDB entry 7YF5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
333 337parallel
Strand 3
B
303 307parallel
Strand 4
B
367 372parallel
Strand 5
B
389 391parallel
Strand 6
B
411 413parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
333 337parallel
Strand 3
A
303 307parallel
Strand 4
A
367 372parallel
Strand 5
A
389 391parallel
Strand 6
A
411 413parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il