Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YFM entry

There are 4 chains in PDB entry 7YFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	CYS 819
B	PRO 50	HIS 829
C	VAL 27	CYS 819
D	PRO 50	HIS 829

There are 96 helices in PDB entry 7YFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	52	Right-handed alpha
Helix 2	AA2	A	70	85	Right-handed alpha
Helix 3	AA3	A	103	114	Right-handed alpha
Helix 4	AA4	A	125	130	Right-handed alpha
Helix 5	AA5	A	143	158	Right-handed alpha
Helix 6	AA6	A	170	186	Right-handed alpha
Helix 7	AA7	A	225	234	Right-handed alpha
Helix 8	AA8	A	245	259	Right-handed alpha
Helix 9	AA9	A	271	280	Right-handed alpha
Helix 10	AB1	A	297	317	Right-handed alpha
Helix 11	AB2	A	337	348	Right-handed alpha
Helix 12	AB3	A	479	492	Right-handed alpha
Helix 13	AB4	A	520	529	Right-handed alpha
Helix 14	AB5	A	541	548	Right-handed alpha
Helix 15	AB6	A	659	677	Right-handed alpha
Helix 16	AB7	A	690	695	Right-handed alpha
Helix 17	AB8	A	709	718	Right-handed alpha
Helix 18	AB9	A	720	730	Right-handed alpha
Helix 19	AC1	A	734	744	Right-handed alpha
Helix 20	AC2	A	754	765	Right-handed alpha
Helix 21	AC3	A	787	804	Right-handed alpha
Helix 22	AC4	A	804	815	Right-handed alpha
Helix 23	AC5	B	63	70	Right-handed alpha
Helix 24	AC6	B	70	78	Right-handed alpha
Helix 25	AC7	B	96	109	Right-handed alpha
Helix 26	AC8	B	126	138	Right-handed alpha
Helix 27	AC9	B	168	182	Right-handed alpha
Helix 28	AD1	B	194	209	Right-handed alpha
Helix 29	AD2	B	228	236	Right-handed alpha
Helix 30	AD3	B	252	258	Right-handed alpha
Helix 31	AD4	B	259	263	Right-handed 310
Helix 32	AD5	B	315	335	Right-handed alpha
Helix 33	AD6	B	336	339	Right-handed 310
Helix 34	AD7	B	359	364	Right-handed 310
Helix 35	AD8	B	368	372	Right-handed 310
Helix 36	AD9	B	417	421	Right-handed 310
Helix 37	AE1	B	486	500	Right-handed alpha
Helix 38	AE2	B	516	520	Right-handed 310
Helix 39	AE3	B	522	530	Right-handed alpha
Helix 40	AE4	B	543	551	Right-handed alpha
Helix 41	AE5	B	662	681	Right-handed alpha
Helix 42	AE6	B	695	700	Right-handed alpha
Helix 43	AE7	B	716	726	Right-handed alpha
Helix 44	AE8	B	726	733	Right-handed alpha
Helix 45	AE9	B	740	750	Right-handed alpha
Helix 46	AF1	B	760	770	Right-handed alpha
Helix 47	AF2	B	799	813	Right-handed alpha
Helix 48	AF3	B	815	824	Right-handed alpha
Helix 49	AF4	C	36	52	Right-handed alpha
Helix 50	AF5	C	70	85	Right-handed alpha
Helix 51	AF6	C	103	114	Right-handed alpha
Helix 52	AF7	C	125	130	Right-handed alpha
Helix 53	AF8	C	143	158	Right-handed alpha
Helix 54	AF9	C	170	186	Right-handed alpha
Helix 55	AG1	C	225	234	Right-handed alpha
Helix 56	AG2	C	245	259	Right-handed alpha
Helix 57	AG3	C	271	280	Right-handed alpha
Helix 58	AG4	C	297	317	Right-handed alpha
Helix 59	AG5	C	337	348	Right-handed alpha
Helix 60	AG6	C	479	492	Right-handed alpha
Helix 61	AG7	C	520	529	Right-handed alpha
Helix 62	AG8	C	541	548	Right-handed alpha
Helix 63	AG9	C	659	677	Right-handed alpha
Helix 64	AH1	C	690	695	Right-handed alpha
Helix 65	AH2	C	709	718	Right-handed alpha
Helix 66	AH3	C	720	730	Right-handed alpha
Helix 67	AH4	C	734	744	Right-handed alpha
Helix 68	AH5	C	754	765	Right-handed alpha
Helix 69	AH6	C	787	804	Right-handed alpha
Helix 70	AH7	C	804	815	Right-handed alpha
Helix 71	AH8	D	63	70	Right-handed alpha
Helix 72	AH9	D	70	78	Right-handed alpha
Helix 73	AI1	D	96	109	Right-handed alpha
Helix 74	AI2	D	126	138	Right-handed alpha
Helix 75	AI3	D	168	182	Right-handed alpha
Helix 76	AI4	D	194	209	Right-handed alpha
Helix 77	AI5	D	228	236	Right-handed alpha
Helix 78	AI6	D	252	258	Right-handed alpha
Helix 79	AI7	D	259	263	Right-handed 310
Helix 80	AI8	D	315	335	Right-handed alpha
Helix 81	AI9	D	336	339	Right-handed 310
Helix 82	AJ1	D	359	364	Right-handed 310
Helix 83	AJ2	D	368	372	Right-handed 310
Helix 84	AJ3	D	417	421	Right-handed 310
Helix 85	AJ4	D	486	500	Right-handed alpha
Helix 86	AJ5	D	516	520	Right-handed 310
Helix 87	AJ6	D	522	530	Right-handed alpha
Helix 88	AJ7	D	543	551	Right-handed alpha
Helix 89	AJ8	D	662	681	Right-handed alpha
Helix 90	AJ9	D	695	700	Right-handed alpha
Helix 91	AK1	D	716	726	Right-handed alpha
Helix 92	AK2	D	726	733	Right-handed alpha
Helix 93	AK3	D	740	750	Right-handed alpha
Helix 94	AK4	D	760	770	Right-handed alpha
Helix 95	AK5	D	799	813	Right-handed alpha
Helix 96	AK6	D	815	824	Right-handed alpha

There are 28 sheets in PDB entry 7YFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	137	138	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	239	243	parallel
Strand 3	A	267	269	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	372	374	anti-parallel
Strand 3	A	386	389	anti-parallel
Strand 4	A	392	395	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	381	382	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	498	499	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	455	457	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	517	519	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	534	first strand
Strand 2	A	782	783	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	777	779	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	732	first strand
Strand 2	A	702	705	parallel
Strand 3	A	749	753	parallel
Strand 4	A	559	563	anti-parallel
Strand 5	A	768	769	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	243	247	parallel
Strand 3	B	271	273	parallel
Strand 4	B	304	309	parallel
Strand 5	B	387	392	anti-parallel
Strand 6	B	398	405	anti-parallel
Strand 7	B	408	411	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	431	436	parallel
Strand 3	B	535	536	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	447	first strand
Strand 2	B	482	485	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	759	first strand
Strand 2	B	557	564	anti-parallel
Strand 3	B	784	789	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	137	138	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	239	243	parallel
Strand 3	C	267	269	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	372	374	anti-parallel
Strand 3	C	386	389	anti-parallel
Strand 4	C	392	395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	381	382	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	423	first strand
Strand 2	C	498	499	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	474	478	anti-parallel
Strand 3	C	455	457	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	510	first strand
Strand 2	C	517	519	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	533	534	first strand
Strand 2	C	782	783	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	555	557	first strand
Strand 2	C	777	779	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	731	732	first strand
Strand 2	C	702	705	parallel
Strand 3	C	749	753	parallel
Strand 4	C	559	563	anti-parallel
Strand 5	C	768	769	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	243	247	parallel
Strand 3	D	271	273	parallel
Strand 4	D	304	309	parallel
Strand 5	D	387	392	anti-parallel
Strand 6	D	398	405	anti-parallel
Strand 7	D	408	411	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	507	first strand
Strand 2	D	431	436	parallel
Strand 3	D	535	536	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	447	first strand
Strand 2	D	482	485	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	759	first strand
Strand 2	D	557	564	anti-parallel
Strand 3	D	784	789	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFM