Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YFN entry

There are 6 chains in PDB entry 7YFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	PHE 375
B	VAL 8	PHE 488
D	SER 21	THR 774
E	PRO 75	LEU 308
T	GLN 836	PHE 3744
F	VAL 520	THR 657

There are143 helices in PDB entry 7YFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	128	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	181	196	Right-handed alpha
Helix 7	AA7	A	202	216	Right-handed alpha
Helix 8	AA8	A	222	233	Right-handed alpha
Helix 9	AA9	A	252	263	Right-handed alpha
Helix 10	AB1	A	273	285	Right-handed alpha
Helix 11	AB2	A	287	296	Right-handed alpha
Helix 12	AB3	A	308	321	Right-handed alpha
Helix 13	AB4	A	337	349	Right-handed alpha
Helix 14	AB5	A	350	355	Right-handed 310
Helix 15	AB6	A	358	365	Right-handed alpha
Helix 16	AB7	A	366	368	Right-handed 310
Helix 17	AB8	A	369	374	Right-handed alpha
Helix 18	AB9	B	82	97	Right-handed alpha
Helix 19	AC1	B	117	131	Right-handed alpha
Helix 20	AC2	B	142	151	Right-handed alpha
Helix 21	AC3	B	186	198	Right-handed alpha
Helix 22	AC4	B	226	237	Right-handed alpha
Helix 23	AC5	B	237	244	Right-handed alpha
Helix 24	AC6	B	254	257	Right-handed 310
Helix 25	AC7	B	258	263	Right-handed alpha
Helix 26	AC8	B	281	294	Right-handed alpha
Helix 27	AC9	B	384	396	Right-handed alpha
Helix 28	AD1	B	400	407	Right-handed alpha
Helix 29	AD2	B	413	417	Right-handed 310
Helix 30	AD3	B	419	432	Right-handed alpha
Helix 31	AD4	B	446	449	Right-handed 310
Helix 32	AD5	B	450	462	Right-handed alpha
Helix 33	AD6	B	471	479	Right-handed alpha
Helix 34	AD7	B	479	487	Right-handed alpha
Helix 35	AD8	D	25	48	Right-handed alpha
Helix 36	AD9	D	69	74	Right-handed alpha
Helix 37	AE1	D	286	297	Right-handed alpha
Helix 38	AE2	D	302	306	Right-handed 310
Helix 39	AE3	D	311	336	Right-handed alpha
Helix 40	AE4	D	357	398	Right-handed alpha
Helix 41	AE5	D	562	566	Right-handed 310
Helix 42	AE6	D	638	642	Right-handed 310
Helix 43	AE7	D	651	666	Right-handed alpha
Helix 44	AE8	D	668	677	Right-handed alpha
Helix 45	AE9	D	692	704	Right-handed alpha
Helix 46	AF1	D	708	712	Right-handed 310
Helix 47	AF2	D	716	735	Right-handed alpha
Helix 48	AF3	D	754	772	Right-handed alpha
Helix 49	AF4	E	98	103	Right-handed alpha
Helix 50	AF5	E	165	177	Right-handed alpha
Helix 51	AF6	E	184	190	Right-handed alpha
Helix 52	AF7	E	197	217	Right-handed alpha
Helix 53	AF8	E	221	226	Right-handed alpha
Helix 54	AF9	E	229	246	Right-handed alpha
Helix 55	AG1	E	247	266	Right-handed alpha
Helix 56	AG2	E	270	279	Right-handed alpha
Helix 57	AG3	E	280	284	Right-handed 310
Helix 58	AG4	E	299	308	Right-handed alpha
Helix 59	AG5	T	837	846	Right-handed alpha
Helix 60	AG6	T	855	865	Right-handed alpha
Helix 61	AG7	T	879	890	Right-handed alpha
Helix 62	AG8	T	893	905	Right-handed alpha
Helix 63	AG9	T	912	932	Right-handed alpha
Helix 64	AH1	T	938	952	Right-handed alpha
Helix 65	AH2	T	970	974	Right-handed 310
Helix 66	AH3	T	996	1006	Right-handed alpha
Helix 67	AH4	T	1010	1034	Right-handed alpha
Helix 68	AH5	T	1038	1052	Right-handed alpha
Helix 69	AH6	T	1068	1091	Right-handed alpha
Helix 70	AH7	T	1095	1125	Right-handed alpha
Helix 71	AH8	T	1143	1155	Right-handed alpha
Helix 72	AH9	T	1157	1180	Right-handed alpha
Helix 73	AI1	T	1181	1188	Right-handed alpha
Helix 74	AI2	T	1189	1203	Right-handed alpha
Helix 75	AI3	T	1205	1224	Right-handed alpha
Helix 76	AI4	T	1228	1233	Right-handed alpha
Helix 77	AI5	T	1234	1247	Right-handed alpha
Helix 78	AI6	T	2416	2424	Right-handed alpha
Helix 79	AI7	T	2428	2443	Right-handed alpha
Helix 80	AI8	T	2446	2457	Right-handed alpha
Helix 81	AI9	T	2468	2480	Right-handed alpha
Helix 82	AJ1	T	2496	2502	Right-handed alpha
Helix 83	AJ2	T	2503	2508	Right-handed 310
Helix 84	AJ3	T	2518	2535	Right-handed alpha
Helix 85	AJ4	T	2537	2552	Right-handed alpha
Helix 86	AJ5	T	2552	2562	Right-handed alpha
Helix 87	AJ6	T	2563	2569	Right-handed alpha
Helix 88	AJ7	T	2575	2588	Right-handed alpha
Helix 89	AJ8	T	2603	2614	Right-handed alpha
Helix 90	AJ9	T	2623	2630	Right-handed 310
Helix 91	AK1	T	2632	2647	Right-handed alpha
Helix 92	AK2	T	2652	2670	Right-handed alpha
Helix 93	AK3	T	2671	2683	Right-handed alpha
Helix 94	AK4	T	2685	2698	Right-handed alpha
Helix 95	AK5	T	2699	2714	Right-handed alpha
Helix 96	AK6	T	2724	2741	Right-handed alpha
Helix 97	AK7	T	2746	2753	Right-handed alpha
Helix 98	AK8	T	2754	2761	Right-handed alpha
Helix 99	AK9	T	2772	2783	Right-handed alpha
Helix 100	AL1	T	2788	2806	Right-handed alpha
Helix 101	AL2	T	2812	2831	Right-handed alpha
Helix 102	AL3	T	2836	2865	Right-handed alpha
Helix 103	AL4	T	2873	2887	Right-handed alpha
Helix 104	AL5	T	2895	2917	Right-handed alpha
Helix 105	AL6	T	2918	2920	Right-handed 310
Helix 106	AL7	T	2941	2958	Right-handed alpha
Helix 107	AL8	T	2959	2968	Right-handed alpha
Helix 108	AL9	T	2979	2994	Right-handed alpha
Helix 109	AM1	T	2995	2999	Right-handed 310
Helix 110	AM2	T	3018	3033	Right-handed alpha
Helix 111	AM3	T	3036	3051	Right-handed alpha
Helix 112	AM4	T	3053	3071	Right-handed alpha
Helix 113	AM5	T	3078	3092	Right-handed alpha
Helix 114	AM6	T	3097	3109	Right-handed alpha
Helix 115	AM7	T	3115	3124	Right-handed alpha
Helix 116	AM8	T	3129	3135	Right-handed 310
Helix 117	AM9	T	3136	3146	Right-handed alpha
Helix 118	AN1	T	3151	3163	Right-handed alpha
Helix 119	AN2	T	3163	3182	Right-handed alpha
Helix 120	AN3	T	3203	3218	Right-handed alpha
Helix 121	AN4	T	3219	3237	Right-handed alpha
Helix 122	AN5	T	3240	3263	Right-handed alpha
Helix 123	AN6	T	3273	3283	Right-handed alpha
Helix 124	AN7	T	3288	3300	Right-handed alpha
Helix 125	AN8	T	3308	3328	Right-handed alpha
Helix 126	AN9	T	3333	3338	Right-handed alpha
Helix 127	AO1	T	3338	3343	Right-handed alpha
Helix 128	AO2	T	3412	3433	Right-handed alpha
Helix 129	AO3	T	3467	3478	Right-handed alpha
Helix 130	AO4	T	3481	3497	Right-handed alpha
Helix 131	AO5	T	3505	3521	Right-handed alpha
Helix 132	AO6	T	3525	3535	Right-handed alpha
Helix 133	AO7	T	3537	3561	Right-handed alpha
Helix 134	AO8	T	3568	3570	Right-handed 310
Helix 135	AO9	T	3625	3633	Right-handed alpha
Helix 136	AP1	T	3633	3640	Right-handed alpha
Helix 137	AP2	T	3640	3654	Right-handed alpha
Helix 138	AP3	T	3658	3678	Right-handed alpha
Helix 139	AP4	T	3685	3707	Right-handed alpha
Helix 140	AP5	T	3717	3729	Right-handed alpha
Helix 141	AP6	T	3729	3735	Right-handed alpha
Helix 142	AP7	T	3736	3741	Right-handed 310
Helix 143	AP8	F	521	535	Right-handed alpha

There are 24 sheets in PDB entry 7YFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	104	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	135	136	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	162	anti-parallel
Strand 3	A	153	155	anti-parallel
Strand 4	A	299	301	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	246	250	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	25	30	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	107	112	parallel
Strand 5	B	136	141	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	69	71	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	79	80	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	181	182	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	155	160	anti-parallel
Strand 4	B	408	411	parallel
Strand 5	B	439	440	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	216	218	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	277	278	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	270	first strand
Strand 2	D	601	604	anti-parallel
Strand 3	F	631	633	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	598	599	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	F	618	620	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	568	569	first strand
Strand 2	F	636	643	parallel
Strand 3	F	647	654	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	741	742	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	83	first strand
Strand 2	E	91	96	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	977	980	first strand
Strand 2	T	989	992	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3331	3332	first strand
Strand 2	T	3378	3382	anti-parallel
Strand 3	T	3387	3395	anti-parallel
Strand 4	T	3371	3374	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3331	3332	first strand
Strand 2	T	3378	3382	anti-parallel
Strand 3	T	3387	3395	anti-parallel
Strand 4	T	3400	3406	anti-parallel
Strand 5	T	3456	3458	anti-parallel
Strand 6	T	3448	3450	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3464	3466	first strand
Strand 2	T	3572	3575	anti-parallel
Strand 3	T	3580	3583	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3590	3591	first strand
Strand 2	T	3613	3614	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	546	548	first strand
Strand 2	F	569	571	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFN