Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YFP entry

There are 6 chains in PDB entry 7YFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 4PHE 375
B
VAL 8PHE 488
D
SER 21THR 774
E
PRO 75LEU 308
F
VAL 520THR 657
T
MET 1PHE 3744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are236 helices in PDB entry 7YFP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
55 61Right-handed alpha
Helix 2
AA2
A
78 92Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
112 128Right-handed alpha
Helix 5
AA5
A
137 146Right-handed alpha
Helix 6
AA6
A
181 197Right-handed alpha
Helix 7
AA7
A
202 217Right-handed alpha
Helix 8
AA8
A
222 233Right-handed alpha
Helix 9
AA9
A
252 263Right-handed alpha
Helix 10
AB1
A
264 268Right-handed 310
Helix 11
AB2
A
273 285Right-handed alpha
Helix 12
AB3
A
289 296Right-handed alpha
Helix 13
AB4
A
308 321Right-handed alpha
Helix 14
AB5
A
337 349Right-handed alpha
Helix 15
AB6
A
350 356Right-handed 310
Helix 16
AB7
A
358 366Right-handed alpha
Helix 17
AB8
A
369 374Right-handed alpha
Helix 18
AB9
B
58 63Right-handed alpha
Helix 19
AC1
B
82 98Right-handed alpha
Helix 20
AC2
B
117 131Right-handed alpha
Helix 21
AC3
B
142 151Right-handed alpha
Helix 22
AC4
B
186 198Right-handed alpha
Helix 23
AC5
B
226 237Right-handed alpha
Helix 24
AC6
B
237 244Right-handed alpha
Helix 25
AC7
B
254 257Right-handed 310
Helix 26
AC8
B
258 263Right-handed alpha
Helix 27
AC9
B
281 294Right-handed alpha
Helix 28
AD1
B
384 396Right-handed alpha
Helix 29
AD2
B
400 407Right-handed alpha
Helix 30
AD3
B
413 417Right-handed 310
Helix 31
AD4
B
419 432Right-handed alpha
Helix 32
AD5
B
446 449Right-handed 310
Helix 33
AD6
B
450 462Right-handed alpha
Helix 34
AD7
B
472 479Right-handed alpha
Helix 35
AD8
B
479 487Right-handed alpha
Helix 36
AD9
D
25 48Right-handed alpha
Helix 37
AE1
D
69 74Right-handed alpha
Helix 38
AE2
D
286 297Right-handed alpha
Helix 39
AE3
D
302 306Right-handed 310
Helix 40
AE4
D
311 336Right-handed alpha
Helix 41
AE5
D
357 398Right-handed alpha
Helix 42
AE6
D
562 566Right-handed 310
Helix 43
AE7
D
638 645Right-handed 310
Helix 44
AE8
D
651 666Right-handed alpha
Helix 45
AE9
D
668 677Right-handed alpha
Helix 46
AF1
D
692 704Right-handed alpha
Helix 47
AF2
D
708 712Right-handed 310
Helix 48
AF3
D
716 735Right-handed alpha
Helix 49
AF4
D
752 772Right-handed alpha
Helix 50
AF5
E
98 103Right-handed alpha
Helix 51
AF6
E
110 114Right-handed 310
Helix 52
AF7
E
165 177Right-handed alpha
Helix 53
AF8
E
184 190Right-handed alpha
Helix 54
AF9
E
197 217Right-handed alpha
Helix 55
AG1
E
220 226Right-handed alpha
Helix 56
AG2
E
229 246Right-handed alpha
Helix 57
AG3
E
247 266Right-handed alpha
Helix 58
AG4
E
270 280Right-handed alpha
Helix 59
AG5
E
281 284Right-handed 310
Helix 60
AG6
E
299 308Right-handed alpha
Helix 61
AG7
F
521 535Right-handed alpha
Helix 62
AG8
F
574 579Right-handed 310
Helix 63
AG9
T
3 11Right-handed alpha
Helix 64
AH1
T
12 14Right-handed 310
Helix 65
AH2
T
22 27Right-handed alpha
Helix 66
AH3
T
28 34Right-handed alpha
Helix 67
AH4
T
47 61Right-handed alpha
Helix 68
AH5
T
72 85Right-handed alpha
Helix 69
AH6
T
92 107Right-handed alpha
Helix 70
AH7
T
115 131Right-handed alpha
Helix 71
AH8
T
137 158Right-handed alpha
Helix 72
AH9
T
218 223Right-handed alpha
Helix 73
AI1
T
231 244Right-handed alpha
Helix 74
AI2
T
249 258Right-handed alpha
Helix 75
AI3
T
291 314Right-handed alpha
Helix 76
AI4
T
323 335Right-handed alpha
Helix 77
AI5
T
341 357Right-handed alpha
Helix 78
AI6
T
358 362Right-handed 310
Helix 79
AI7
T
363 369Right-handed alpha
Helix 80
AI8
T
374 378Right-handed 310
Helix 81
AI9
T
380 403Right-handed alpha
Helix 82
AJ1
T
407 424Right-handed alpha
Helix 83
AJ2
T
429 453Right-handed alpha
Helix 84
AJ3
T
456 504Right-handed alpha
Helix 85
AJ4
T
511 522Right-handed alpha
Helix 86
AJ5
T
562 567Right-handed alpha
Helix 87
AJ6
T
578 601Right-handed alpha
Helix 88
AJ7
T
602 604Right-handed 310
Helix 89
AJ8
T
607 612Right-handed alpha
Helix 90
AJ9
T
627 645Right-handed alpha
Helix 91
AK1
T
646 648Right-handed 310
Helix 92
AK2
T
677 691Right-handed alpha
Helix 93
AK3
T
694 714Right-handed alpha
Helix 94
AK4
T
717 729Right-handed alpha
Helix 95
AK5
T
732 748Right-handed alpha
Helix 96
AK6
T
749 751Right-handed 310
Helix 97
AK7
T
755 776Right-handed alpha
Helix 98
AK8
T
787 802Right-handed alpha
Helix 99
AK9
T
804 819Right-handed alpha
Helix 100
AL1
T
831 844Right-handed alpha
Helix 101
AL2
T
855 864Right-handed alpha
Helix 102
AL3
T
879 889Right-handed alpha
Helix 103
AL4
T
893 905Right-handed alpha
Helix 104
AL5
T
912 918Right-handed alpha
Helix 105
AL6
T
920 932Right-handed alpha
Helix 106
AL7
T
938 952Right-handed alpha
Helix 107
AL8
T
970 974Right-handed 310
Helix 108
AL9
T
996 1006Right-handed alpha
Helix 109
AM1
T
1010 1034Right-handed alpha
Helix 110
AM2
T
1038 1052Right-handed alpha
Helix 111
AM3
T
1068 1091Right-handed alpha
Helix 112
AM4
T
1095 1125Right-handed alpha
Helix 113
AM5
T
1143 1155Right-handed alpha
Helix 114
AM6
T
1157 1180Right-handed alpha
Helix 115
AM7
T
1181 1188Right-handed alpha
Helix 116
AM8
T
1189 1203Right-handed alpha
Helix 117
AM9
T
1205 1224Right-handed alpha
Helix 118
AN1
T
1227 1248Right-handed alpha
Helix 119
AN2
T
1253 1273Right-handed alpha
Helix 120
AN3
T
1283 1296Right-handed alpha
Helix 121
AN4
T
1300 1317Right-handed alpha
Helix 122
AN5
T
1321 1326Right-handed alpha
Helix 123
AN6
T
1329 1340Right-handed alpha
Helix 124
AN7
T
1346 1363Right-handed alpha
Helix 125
AN8
T
1371 1384Right-handed alpha
Helix 126
AN9
T
1403 1425Right-handed alpha
Helix 127
AO1
T
1436 1450Right-handed alpha
Helix 128
AO2
T
1452 1467Right-handed alpha
Helix 129
AO3
T
1477 1490Right-handed alpha
Helix 130
AO4
T
1496 1509Right-handed alpha
Helix 131
AO5
T
1517 1530Right-handed alpha
Helix 132
AO6
T
1531 1539Right-handed alpha
Helix 133
AO7
T
1542 1545Right-handed 310
Helix 134
AO8
T
1546 1562Right-handed alpha
Helix 135
AO9
T
1568 1585Right-handed alpha
Helix 136
AP1
T
1592 1604Right-handed alpha
Helix 137
AP2
T
1605 1614Right-handed alpha
Helix 138
AP3
T
1617 1630Right-handed alpha
Helix 139
AP4
T
1634 1659Right-handed alpha
Helix 140
AP5
T
1661 1680Right-handed alpha
Helix 141
AP6
T
1689 1709Right-handed alpha
Helix 142
AP7
T
1715 1736Right-handed alpha
Helix 143
AP8
T
1739 1750Right-handed alpha
Helix 144
AP9
T
1761 1769Right-handed alpha
Helix 145
AQ1
T
1777 1792Right-handed alpha
Helix 146
AQ2
T
1796 1818Right-handed alpha
Helix 147
AQ3
T
1832 1844Right-handed alpha
Helix 148
AQ4
T
1858 1875Right-handed alpha
Helix 149
AQ5
T
1879 1892Right-handed alpha
Helix 150
AQ6
T
1893 1896Right-handed 310
Helix 151
AQ7
T
1898 1916Right-handed alpha
Helix 152
AQ8
T
1919 1932Right-handed alpha
Helix 153
AQ9
T
1938 1957Right-handed alpha
Helix 154
AR1
T
1964 1976Right-handed alpha
Helix 155
AR2
T
1980 1992Right-handed alpha
Helix 156
AR3
T
2001 2016Right-handed alpha
Helix 157
AR4
T
2023 2043Right-handed alpha
Helix 158
AR5
T
2090 2107Right-handed alpha
Helix 159
AR6
T
2116 2129Right-handed alpha
Helix 160
AR7
T
2140 2146Right-handed alpha
Helix 161
AR8
T
2155 2174Right-handed alpha
Helix 162
AR9
T
2183 2201Right-handed alpha
Helix 163
AS1
T
2203 2218Right-handed alpha
Helix 164
AS2
T
2221 2226Right-handed alpha
Helix 165
AS3
T
2229 2246Right-handed alpha
Helix 166
AS4
T
2249 2267Right-handed alpha
Helix 167
AS5
T
2274 2294Right-handed alpha
Helix 168
AS6
T
2301 2322Right-handed alpha
Helix 169
AS7
T
2328 2342Right-handed alpha
Helix 170
AS8
T
2345 2361Right-handed alpha
Helix 171
AS9
T
2368 2379Right-handed alpha
Helix 172
AT1
T
2381 2386Right-handed alpha
Helix 173
AT2
T
2387 2405Right-handed alpha
Helix 174
AT3
T
2413 2423Right-handed alpha
Helix 175
AT4
T
2428 2442Right-handed alpha
Helix 176
AT5
T
2446 2457Right-handed alpha
Helix 177
AT6
T
2469 2478Right-handed alpha
Helix 178
AT7
T
2496 2501Right-handed alpha
Helix 179
AT8
T
2518 2535Right-handed alpha
Helix 180
AT9
T
2537 2550Right-handed alpha
Helix 181
AU1
T
2552 2570Right-handed alpha
Helix 182
AU2
T
2575 2588Right-handed alpha
Helix 183
AU3
T
2602 2612Right-handed alpha
Helix 184
AU4
T
2632 2646Right-handed alpha
Helix 185
AU5
T
2652 2670Right-handed alpha
Helix 186
AU6
T
2671 2683Right-handed alpha
Helix 187
AU7
T
2685 2698Right-handed alpha
Helix 188
AU8
T
2699 2714Right-handed alpha
Helix 189
AU9
T
2724 2741Right-handed alpha
Helix 190
AV1
T
2745 2751Right-handed alpha
Helix 191
AV2
T
2754 2761Right-handed alpha
Helix 192
AV3
T
2772 2783Right-handed alpha
Helix 193
AV4
T
2788 2806Right-handed alpha
Helix 194
AV5
T
2812 2830Right-handed alpha
Helix 195
AV6
T
2838 2865Right-handed alpha
Helix 196
AV7
T
2873 2887Right-handed alpha
Helix 197
AV8
T
2895 2917Right-handed alpha
Helix 198
AV9
T
2918 2920Right-handed 310
Helix 199
AW1
T
2941 2958Right-handed alpha
Helix 200
AW2
T
2959 2967Right-handed alpha
Helix 201
AW3
T
2968 2972Right-handed 310
Helix 202
AW4
T
2979 2993Right-handed alpha
Helix 203
AW5
T
2998 3003Right-handed alpha
Helix 204
AW6
T
3016 3033Right-handed alpha
Helix 205
AW7
T
3036 3051Right-handed alpha
Helix 206
AW8
T
3054 3071Right-handed alpha
Helix 207
AW9
T
3078 3092Right-handed alpha
Helix 208
AX1
T
3097 3109Right-handed alpha
Helix 209
AX2
T
3115 3122Right-handed alpha
Helix 210
AX3
T
3129 3134Right-handed alpha
Helix 211
AX4
T
3136 3146Right-handed alpha
Helix 212
AX5
T
3152 3163Right-handed alpha
Helix 213
AX6
T
3164 3182Right-handed alpha
Helix 214
AX7
T
3203 3218Right-handed alpha
Helix 215
AX8
T
3219 3236Right-handed alpha
Helix 216
AX9
T
3240 3263Right-handed alpha
Helix 217
AY1
T
3273 3283Right-handed alpha
Helix 218
AY2
T
3288 3301Right-handed alpha
Helix 219
AY3
T
3308 3328Right-handed alpha
Helix 220
AY4
T
3333 3338Right-handed alpha
Helix 221
AY5
T
3338 3343Right-handed alpha
Helix 222
AY6
T
3344 3347Right-handed 310
Helix 223
AY7
T
3356 3360Right-handed 310
Helix 224
AY8
T
3412 3433Right-handed alpha
Helix 225
AY9
T
3467 3478Right-handed alpha
Helix 226
AZ1
T
3481 3498Right-handed alpha
Helix 227
AZ2
T
3506 3521Right-handed alpha
Helix 228
AZ3
T
3525 3535Right-handed alpha
Helix 229
AZ4
T
3540 3561Right-handed alpha
Helix 230
AZ5
T
3625 3632Right-handed alpha
Helix 231
AZ6
T
3633 3640Right-handed alpha
Helix 232
AZ7
T
3640 3654Right-handed alpha
Helix 233
AZ8
T
3658 3678Right-handed alpha
Helix 234
AZ9
T
3685 3705Right-handed alpha
Helix 235
BA1
T
3717 3729Right-handed alpha
Helix 236
BA2
T
3729 3735Right-handed alpha
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There are 22 sheets in PDB entry 7YFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 9first strand
Strand 2
A
103 104parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
29 32anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 38first strand
Strand 2
A
65 68anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 107first strand
Strand 2
A
135 136parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 178first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
298 300parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 242first strand
Strand 2
A
246 250anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
38 41first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
17 21anti-parallel
Strand 4
B
107 112parallel
Strand 5
B
136 141parallel
Strand 6
B
470 471anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
43 47first strand
Strand 2
B
69 73anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 175first strand
Strand 2
B
166 171anti-parallel
Strand 3
B
181 182anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 175first strand
Strand 2
B
166 171anti-parallel
Strand 3
B
155 159anti-parallel
Strand 4
B
408 411parallel
Strand 5
B
439 440parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
209 212first strand
Strand 2
B
216 218anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
585 587first strand
Strand 2
D
268 274anti-parallel
Strand 3
D
598 604anti-parallel
Strand 4
F
631 633anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
280 282first strand
Strand 2
F
618 620parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
649 650first strand
Strand 2
D
741 742parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
91 96first strand
Strand 2
E
78 84anti-parallel
Strand 3
E
107 108parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
546 547first strand
Strand 2
F
570 571anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
636 642first strand
Strand 2
F
648 654anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
977 980first strand
Strand 2
T
989 992anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
3331 3332first strand
Strand 2
T
3378 3382anti-parallel
Strand 3
T
3387 3395anti-parallel
Strand 4
T
3371 3374anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
3331 3332first strand
Strand 2
T
3378 3382anti-parallel
Strand 3
T
3387 3395anti-parallel
Strand 4
T
3400 3406anti-parallel
Strand 5
T
3456 3458anti-parallel
Strand 6
T
3448 3450anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
3464 3466first strand
Strand 2
T
3572 3575anti-parallel
Strand 3
T
3581 3583anti-parallel
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