Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YFP entry

There are 6 chains in PDB entry 7YFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	PHE 375
B	VAL 8	PHE 488
D	SER 21	THR 774
E	PRO 75	LEU 308
F	VAL 520	THR 657
T	MET 1	PHE 3744

There are236 helices in PDB entry 7YFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	128	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	181	197	Right-handed alpha
Helix 7	AA7	A	202	217	Right-handed alpha
Helix 8	AA8	A	222	233	Right-handed alpha
Helix 9	AA9	A	252	263	Right-handed alpha
Helix 10	AB1	A	264	268	Right-handed 310
Helix 11	AB2	A	273	285	Right-handed alpha
Helix 12	AB3	A	289	296	Right-handed alpha
Helix 13	AB4	A	308	321	Right-handed alpha
Helix 14	AB5	A	337	349	Right-handed alpha
Helix 15	AB6	A	350	356	Right-handed 310
Helix 16	AB7	A	358	366	Right-handed alpha
Helix 17	AB8	A	369	374	Right-handed alpha
Helix 18	AB9	B	58	63	Right-handed alpha
Helix 19	AC1	B	82	98	Right-handed alpha
Helix 20	AC2	B	117	131	Right-handed alpha
Helix 21	AC3	B	142	151	Right-handed alpha
Helix 22	AC4	B	186	198	Right-handed alpha
Helix 23	AC5	B	226	237	Right-handed alpha
Helix 24	AC6	B	237	244	Right-handed alpha
Helix 25	AC7	B	254	257	Right-handed 310
Helix 26	AC8	B	258	263	Right-handed alpha
Helix 27	AC9	B	281	294	Right-handed alpha
Helix 28	AD1	B	384	396	Right-handed alpha
Helix 29	AD2	B	400	407	Right-handed alpha
Helix 30	AD3	B	413	417	Right-handed 310
Helix 31	AD4	B	419	432	Right-handed alpha
Helix 32	AD5	B	446	449	Right-handed 310
Helix 33	AD6	B	450	462	Right-handed alpha
Helix 34	AD7	B	472	479	Right-handed alpha
Helix 35	AD8	B	479	487	Right-handed alpha
Helix 36	AD9	D	25	48	Right-handed alpha
Helix 37	AE1	D	69	74	Right-handed alpha
Helix 38	AE2	D	286	297	Right-handed alpha
Helix 39	AE3	D	302	306	Right-handed 310
Helix 40	AE4	D	311	336	Right-handed alpha
Helix 41	AE5	D	357	398	Right-handed alpha
Helix 42	AE6	D	562	566	Right-handed 310
Helix 43	AE7	D	638	645	Right-handed 310
Helix 44	AE8	D	651	666	Right-handed alpha
Helix 45	AE9	D	668	677	Right-handed alpha
Helix 46	AF1	D	692	704	Right-handed alpha
Helix 47	AF2	D	708	712	Right-handed 310
Helix 48	AF3	D	716	735	Right-handed alpha
Helix 49	AF4	D	752	772	Right-handed alpha
Helix 50	AF5	E	98	103	Right-handed alpha
Helix 51	AF6	E	110	114	Right-handed 310
Helix 52	AF7	E	165	177	Right-handed alpha
Helix 53	AF8	E	184	190	Right-handed alpha
Helix 54	AF9	E	197	217	Right-handed alpha
Helix 55	AG1	E	220	226	Right-handed alpha
Helix 56	AG2	E	229	246	Right-handed alpha
Helix 57	AG3	E	247	266	Right-handed alpha
Helix 58	AG4	E	270	280	Right-handed alpha
Helix 59	AG5	E	281	284	Right-handed 310
Helix 60	AG6	E	299	308	Right-handed alpha
Helix 61	AG7	F	521	535	Right-handed alpha
Helix 62	AG8	F	574	579	Right-handed 310
Helix 63	AG9	T	3	11	Right-handed alpha
Helix 64	AH1	T	12	14	Right-handed 310
Helix 65	AH2	T	22	27	Right-handed alpha
Helix 66	AH3	T	28	34	Right-handed alpha
Helix 67	AH4	T	47	61	Right-handed alpha
Helix 68	AH5	T	72	85	Right-handed alpha
Helix 69	AH6	T	92	107	Right-handed alpha
Helix 70	AH7	T	115	131	Right-handed alpha
Helix 71	AH8	T	137	158	Right-handed alpha
Helix 72	AH9	T	218	223	Right-handed alpha
Helix 73	AI1	T	231	244	Right-handed alpha
Helix 74	AI2	T	249	258	Right-handed alpha
Helix 75	AI3	T	291	314	Right-handed alpha
Helix 76	AI4	T	323	335	Right-handed alpha
Helix 77	AI5	T	341	357	Right-handed alpha
Helix 78	AI6	T	358	362	Right-handed 310
Helix 79	AI7	T	363	369	Right-handed alpha
Helix 80	AI8	T	374	378	Right-handed 310
Helix 81	AI9	T	380	403	Right-handed alpha
Helix 82	AJ1	T	407	424	Right-handed alpha
Helix 83	AJ2	T	429	453	Right-handed alpha
Helix 84	AJ3	T	456	504	Right-handed alpha
Helix 85	AJ4	T	511	522	Right-handed alpha
Helix 86	AJ5	T	562	567	Right-handed alpha
Helix 87	AJ6	T	578	601	Right-handed alpha
Helix 88	AJ7	T	602	604	Right-handed 310
Helix 89	AJ8	T	607	612	Right-handed alpha
Helix 90	AJ9	T	627	645	Right-handed alpha
Helix 91	AK1	T	646	648	Right-handed 310
Helix 92	AK2	T	677	691	Right-handed alpha
Helix 93	AK3	T	694	714	Right-handed alpha
Helix 94	AK4	T	717	729	Right-handed alpha
Helix 95	AK5	T	732	748	Right-handed alpha
Helix 96	AK6	T	749	751	Right-handed 310
Helix 97	AK7	T	755	776	Right-handed alpha
Helix 98	AK8	T	787	802	Right-handed alpha
Helix 99	AK9	T	804	819	Right-handed alpha
Helix 100	AL1	T	831	844	Right-handed alpha
Helix 101	AL2	T	855	864	Right-handed alpha
Helix 102	AL3	T	879	889	Right-handed alpha
Helix 103	AL4	T	893	905	Right-handed alpha
Helix 104	AL5	T	912	918	Right-handed alpha
Helix 105	AL6	T	920	932	Right-handed alpha
Helix 106	AL7	T	938	952	Right-handed alpha
Helix 107	AL8	T	970	974	Right-handed 310
Helix 108	AL9	T	996	1006	Right-handed alpha
Helix 109	AM1	T	1010	1034	Right-handed alpha
Helix 110	AM2	T	1038	1052	Right-handed alpha
Helix 111	AM3	T	1068	1091	Right-handed alpha
Helix 112	AM4	T	1095	1125	Right-handed alpha
Helix 113	AM5	T	1143	1155	Right-handed alpha
Helix 114	AM6	T	1157	1180	Right-handed alpha
Helix 115	AM7	T	1181	1188	Right-handed alpha
Helix 116	AM8	T	1189	1203	Right-handed alpha
Helix 117	AM9	T	1205	1224	Right-handed alpha
Helix 118	AN1	T	1227	1248	Right-handed alpha
Helix 119	AN2	T	1253	1273	Right-handed alpha
Helix 120	AN3	T	1283	1296	Right-handed alpha
Helix 121	AN4	T	1300	1317	Right-handed alpha
Helix 122	AN5	T	1321	1326	Right-handed alpha
Helix 123	AN6	T	1329	1340	Right-handed alpha
Helix 124	AN7	T	1346	1363	Right-handed alpha
Helix 125	AN8	T	1371	1384	Right-handed alpha
Helix 126	AN9	T	1403	1425	Right-handed alpha
Helix 127	AO1	T	1436	1450	Right-handed alpha
Helix 128	AO2	T	1452	1467	Right-handed alpha
Helix 129	AO3	T	1477	1490	Right-handed alpha
Helix 130	AO4	T	1496	1509	Right-handed alpha
Helix 131	AO5	T	1517	1530	Right-handed alpha
Helix 132	AO6	T	1531	1539	Right-handed alpha
Helix 133	AO7	T	1542	1545	Right-handed 310
Helix 134	AO8	T	1546	1562	Right-handed alpha
Helix 135	AO9	T	1568	1585	Right-handed alpha
Helix 136	AP1	T	1592	1604	Right-handed alpha
Helix 137	AP2	T	1605	1614	Right-handed alpha
Helix 138	AP3	T	1617	1630	Right-handed alpha
Helix 139	AP4	T	1634	1659	Right-handed alpha
Helix 140	AP5	T	1661	1680	Right-handed alpha
Helix 141	AP6	T	1689	1709	Right-handed alpha
Helix 142	AP7	T	1715	1736	Right-handed alpha
Helix 143	AP8	T	1739	1750	Right-handed alpha
Helix 144	AP9	T	1761	1769	Right-handed alpha
Helix 145	AQ1	T	1777	1792	Right-handed alpha
Helix 146	AQ2	T	1796	1818	Right-handed alpha
Helix 147	AQ3	T	1832	1844	Right-handed alpha
Helix 148	AQ4	T	1858	1875	Right-handed alpha
Helix 149	AQ5	T	1879	1892	Right-handed alpha
Helix 150	AQ6	T	1893	1896	Right-handed 310
Helix 151	AQ7	T	1898	1916	Right-handed alpha
Helix 152	AQ8	T	1919	1932	Right-handed alpha
Helix 153	AQ9	T	1938	1957	Right-handed alpha
Helix 154	AR1	T	1964	1976	Right-handed alpha
Helix 155	AR2	T	1980	1992	Right-handed alpha
Helix 156	AR3	T	2001	2016	Right-handed alpha
Helix 157	AR4	T	2023	2043	Right-handed alpha
Helix 158	AR5	T	2090	2107	Right-handed alpha
Helix 159	AR6	T	2116	2129	Right-handed alpha
Helix 160	AR7	T	2140	2146	Right-handed alpha
Helix 161	AR8	T	2155	2174	Right-handed alpha
Helix 162	AR9	T	2183	2201	Right-handed alpha
Helix 163	AS1	T	2203	2218	Right-handed alpha
Helix 164	AS2	T	2221	2226	Right-handed alpha
Helix 165	AS3	T	2229	2246	Right-handed alpha
Helix 166	AS4	T	2249	2267	Right-handed alpha
Helix 167	AS5	T	2274	2294	Right-handed alpha
Helix 168	AS6	T	2301	2322	Right-handed alpha
Helix 169	AS7	T	2328	2342	Right-handed alpha
Helix 170	AS8	T	2345	2361	Right-handed alpha
Helix 171	AS9	T	2368	2379	Right-handed alpha
Helix 172	AT1	T	2381	2386	Right-handed alpha
Helix 173	AT2	T	2387	2405	Right-handed alpha
Helix 174	AT3	T	2413	2423	Right-handed alpha
Helix 175	AT4	T	2428	2442	Right-handed alpha
Helix 176	AT5	T	2446	2457	Right-handed alpha
Helix 177	AT6	T	2469	2478	Right-handed alpha
Helix 178	AT7	T	2496	2501	Right-handed alpha
Helix 179	AT8	T	2518	2535	Right-handed alpha
Helix 180	AT9	T	2537	2550	Right-handed alpha
Helix 181	AU1	T	2552	2570	Right-handed alpha
Helix 182	AU2	T	2575	2588	Right-handed alpha
Helix 183	AU3	T	2602	2612	Right-handed alpha
Helix 184	AU4	T	2632	2646	Right-handed alpha
Helix 185	AU5	T	2652	2670	Right-handed alpha
Helix 186	AU6	T	2671	2683	Right-handed alpha
Helix 187	AU7	T	2685	2698	Right-handed alpha
Helix 188	AU8	T	2699	2714	Right-handed alpha
Helix 189	AU9	T	2724	2741	Right-handed alpha
Helix 190	AV1	T	2745	2751	Right-handed alpha
Helix 191	AV2	T	2754	2761	Right-handed alpha
Helix 192	AV3	T	2772	2783	Right-handed alpha
Helix 193	AV4	T	2788	2806	Right-handed alpha
Helix 194	AV5	T	2812	2830	Right-handed alpha
Helix 195	AV6	T	2838	2865	Right-handed alpha
Helix 196	AV7	T	2873	2887	Right-handed alpha
Helix 197	AV8	T	2895	2917	Right-handed alpha
Helix 198	AV9	T	2918	2920	Right-handed 310
Helix 199	AW1	T	2941	2958	Right-handed alpha
Helix 200	AW2	T	2959	2967	Right-handed alpha
Helix 201	AW3	T	2968	2972	Right-handed 310
Helix 202	AW4	T	2979	2993	Right-handed alpha
Helix 203	AW5	T	2998	3003	Right-handed alpha
Helix 204	AW6	T	3016	3033	Right-handed alpha
Helix 205	AW7	T	3036	3051	Right-handed alpha
Helix 206	AW8	T	3054	3071	Right-handed alpha
Helix 207	AW9	T	3078	3092	Right-handed alpha
Helix 208	AX1	T	3097	3109	Right-handed alpha
Helix 209	AX2	T	3115	3122	Right-handed alpha
Helix 210	AX3	T	3129	3134	Right-handed alpha
Helix 211	AX4	T	3136	3146	Right-handed alpha
Helix 212	AX5	T	3152	3163	Right-handed alpha
Helix 213	AX6	T	3164	3182	Right-handed alpha
Helix 214	AX7	T	3203	3218	Right-handed alpha
Helix 215	AX8	T	3219	3236	Right-handed alpha
Helix 216	AX9	T	3240	3263	Right-handed alpha
Helix 217	AY1	T	3273	3283	Right-handed alpha
Helix 218	AY2	T	3288	3301	Right-handed alpha
Helix 219	AY3	T	3308	3328	Right-handed alpha
Helix 220	AY4	T	3333	3338	Right-handed alpha
Helix 221	AY5	T	3338	3343	Right-handed alpha
Helix 222	AY6	T	3344	3347	Right-handed 310
Helix 223	AY7	T	3356	3360	Right-handed 310
Helix 224	AY8	T	3412	3433	Right-handed alpha
Helix 225	AY9	T	3467	3478	Right-handed alpha
Helix 226	AZ1	T	3481	3498	Right-handed alpha
Helix 227	AZ2	T	3506	3521	Right-handed alpha
Helix 228	AZ3	T	3525	3535	Right-handed alpha
Helix 229	AZ4	T	3540	3561	Right-handed alpha
Helix 230	AZ5	T	3625	3632	Right-handed alpha
Helix 231	AZ6	T	3633	3640	Right-handed alpha
Helix 232	AZ7	T	3640	3654	Right-handed alpha
Helix 233	AZ8	T	3658	3678	Right-handed alpha
Helix 234	AZ9	T	3685	3705	Right-handed alpha
Helix 235	BA1	T	3717	3729	Right-handed alpha
Helix 236	BA2	T	3729	3735	Right-handed alpha

There are 22 sheets in PDB entry 7YFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	103	104	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	A	29	32	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	65	68	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	135	136	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	298	300	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	246	250	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	25	30	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	107	112	parallel
Strand 5	B	136	141	parallel
Strand 6	B	470	471	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	69	73	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	181	182	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	408	411	parallel
Strand 5	B	439	440	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	216	218	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	587	first strand
Strand 2	D	268	274	anti-parallel
Strand 3	D	598	604	anti-parallel
Strand 4	F	631	633	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	F	618	620	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	741	742	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	96	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	107	108	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	546	547	first strand
Strand 2	F	570	571	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	636	642	first strand
Strand 2	F	648	654	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	977	980	first strand
Strand 2	T	989	992	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3331	3332	first strand
Strand 2	T	3378	3382	anti-parallel
Strand 3	T	3387	3395	anti-parallel
Strand 4	T	3371	3374	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3331	3332	first strand
Strand 2	T	3378	3382	anti-parallel
Strand 3	T	3387	3395	anti-parallel
Strand 4	T	3400	3406	anti-parallel
Strand 5	T	3456	3458	anti-parallel
Strand 6	T	3448	3450	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3464	3466	first strand
Strand 2	T	3572	3575	anti-parallel
Strand 3	T	3581	3583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFP